Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.2e-135 486.5 247 100.0
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.9e-125 452.6 247 93.9
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.8e-123 446.0 247 92.7
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.1e-123 444.9 247 92.3
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.3e-123 444.5 247 92.3
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 1.5e-122 443.0 247 91.9
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.2e-120 434.1 247 88.7
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.1e-118 427.9 247 87.4
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.1e-118 427.9 247 87.9
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.3e-116 423.3 265 84.5
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.3e-113 413.3 247 87.0
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.3e-110 402.5 247 81.8
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 5.9e-106 387.9 247 81.8
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.5e-104 382.5 249 80.7
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.6e-103 379.8 249 78.7
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 3.6e-103 378.6 250 78.0
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 4.7e-103 378.3 253 77.1
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 3.0e-102 375.6 250 77.6
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.9e-102 375.2 250 79.2
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.9e-102 375.2 250 79.2
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.5e-101 373.2 248 78.6
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.5e-101 373.2 249 78.3
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.6e-101 372.5 255 78.0
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 4.4e-101 371.7 249 78.7
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 4.4e-101 371.7 248 77.0
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.7e-101 371.3 249 77.5
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.3e-100 370.2 247 76.9
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 2.8e-100 369.0 251 76.5
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.8e-100 369.0 247 76.1
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.7e-100 368.6 250 78.0
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 6.3e-100 367.9 247 76.5
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 6.3e-100 367.9 249 76.7
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 8.2e-100 367.5 247 76.1
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.4e-99 366.7 252 77.0
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.1e-99 365.5 251 76.9
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 9.1e-99 364.0 249 75.9
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.2e-98 363.6 249 75.9
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.6e-98 363.2 249 75.9
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 4.5e-98 361.7 250 75.6
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 5.9e-98 361.3 250 76.0
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 5.9e-98 361.3 246 76.4
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 7.7e-98 360.9 251 76.1
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.3e-97 360.1 257 74.7
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 3.8e-97 358.6 247 77.3
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 5.0e-97 358.2 249 75.1
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 8.5e-97 357.5 250 74.8
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 8.5e-97 357.5 247 74.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.1e-96 357.1 248 75.0
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 2.5e-96 355.9 248 75.0
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.5e-96 355.9 248 75.4
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 2.5e-96 355.9 257 74.7
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.2e-96 355.5 248 75.0
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.2e-96 355.5 248 75.0
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.2e-96 355.5 248 75.0
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.2e-96 355.5 247 74.9
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.2e-95 353.6 252 71.4
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.2e-95 353.6 252 75.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.6e-95 353.2 250 74.0
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 3.6e-95 352.1 250 73.6
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.7e-95 351.7 248 74.6
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 8.0e-95 350.9 247 74.1
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 8.0e-95 350.9 215 81.9
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.0e-94 350.5 247 74.1
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.4e-94 350.1 249 75.1
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.0e-94 348.6 242 72.3
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 6.8e-94 347.8 249 71.9
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 6.8e-94 347.8 246 72.8
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.2e-93 347.1 247 72.5
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.5e-93 346.7 252 74.2
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.5e-93 346.7 249 72.7
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 4.4e-93 345.1 249 72.7
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 4.4e-93 345.1 244 72.5
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 7.5e-93 344.4 245 73.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 9.8e-93 344.0 250 71.6
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 4.8e-92 341.7 247 72.9
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.1e-91 340.5 244 70.5
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.4e-91 339.3 248 71.0
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 5.4e-91 338.2 250 70.8
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 7.0e-91 337.8 256 72.7
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.2e-90 337.0 248 70.2
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.0e-90 336.3 245 71.8
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.7e-90 335.9 245 69.8
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 2.7e-90 335.9 243 74.5
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.5e-90 335.5 238 73.5
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.9e-90 334.7 250 70.8
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.0e-89 334.0 238 73.5
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.0e-89 334.0 248 69.0
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.0e-89 334.0 250 71.2
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.3e-89 333.6 253 71.9
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-89 333.2 249 68.7
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.7e-89 333.2 248 69.8
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.7e-89 333.2 249 69.5
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.9e-89 332.4 229 75.1
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.9e-89 332.4 249 68.7
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 3.8e-89 332.0 239 74.1
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 5.0e-89 331.6 251 68.1
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 6.5e-89 331.3 313 60.7
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 8.5e-89 330.9 249 67.9
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.5e-88 330.1 255 68.2
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 1.5e-88 330.1 256 69.9
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.9e-88 329.7 256 70.7
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.9e-88 329.7 256 70.3
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.4e-88 327.4 248 67.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.7e-87 325.9 247 68.8
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.7e-87 325.1 234 73.1
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 6.1e-87 324.7 253 70.4
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.3e-86 322.8 240 73.3
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.3e-86 322.8 239 74.5
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 4.0e-86 322.0 253 70.4
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 4.4e-85 318.5 248 67.3
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 9.8e-85 317.4 241 72.2
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.3e-84 317.0 249 66.3
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 2.2e-84 316.2 264 66.3
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.1e-83 313.9 244 70.1
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.4e-83 313.5 246 66.7
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.8e-83 313.2 247 66.8
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.8e-83 313.2 251 64.5
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 3.1e-83 312.4 323 57.3
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.0e-83 311.2 234 70.5
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.3e-81 306.2 245 67.8
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.3e-81 306.2 218 72.5
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.5e-80 303.5 227 71.4
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.5e-80 302.8 248 64.5
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.5e-80 302.8 248 64.5
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.5e-80 302.8 248 64.5
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 3.3e-80 302.4 255 64.3
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.5e-80 301.6 218 71.6
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.5e-80 300.8 204 74.0
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.1e-79 299.7 248 63.7
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.0e-78 297.4 251 62.9
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 7.0e-75 284.6 315 53.3
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.6e-72 275.0 233 63.1
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.6e-71 273.5 250 58.4
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.0e-70 270.8 253 57.3
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.8e-70 270.0 239 63.6
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.3e-68 263.8 245 61.2
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.2e-68 263.1 215 67.4
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.4e-67 258.5 251 57.0
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.4e-67 258.5 167 79.6
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.7e-65 253.4 150 80.7
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.0e-65 251.9 167 77.8
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.1e-63 246.5 148 80.4
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.8e-62 243.4 250 55.6
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 2.4e-59 233.0 257 52.1
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.4e-59 233.0 136 82.4
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 3.6e-55 219.2 248 52.0
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.5e-50 202.6 270 46.7
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.9e-48 196.8 121 80.2
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.6e-48 195.3 195 57.9
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 1.1e-46 191.0 286 43.4
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 6.4e-44 181.8 117 78.6
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 5.3e-38 162.2 131 71.0
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 8.4e-36 154.8 130 66.2
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 5.4e-35 152.1 267 39.7
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.5e-32 143.3 270 37.0
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.7e-28 130.6 101 69.3
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.8e-25 120.6 95 62.1
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 6.7e-25 118.6 89 69.7
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 6.7e-25 118.6 87 62.1
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.8e-23 113.2 69 75.4
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 4.8e-23 112.5 73 75.3
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 2.0e-21 107.1 73 71.2
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 3.9e-17 92.8 122 54.1
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.9e-16 90.5 110 39.1
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 3.7e-15 86.3 90 44.4
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 9.0e-14 81.6 78 57.7
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.6e-13 78.6 98 55.1
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 4.2e-11 72.8 135 41.5
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.2e-10 71.2 81 46.9
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 8.7e-09 65.1 134 34.3


User provided reference genes

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