Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 0.0e+00 1318.5 646 100.0
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 0.0e+00 1196.0 646 90.4
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 0.0e+00 1144.0 646 86.8
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 0.0e+00 1140.6 646 86.5
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 0.0e+00 1140.2 647 86.2
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 0.0e+00 1135.6 646 86.1
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.3e-311 1072.4 655 82.3
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.6e-310 1068.1 655 82.0
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.5e-307 1057.7 654 81.3
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.6e-296 1022.3 650 78.0
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.7e-293 1012.3 657 76.9
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 1.7e-293 1012.3 664 75.9
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 3.1e-292 1008.1 657 76.7
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 3.1e-292 1008.1 657 77.0
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 3.5e-291 1004.6 648 76.1
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 9.8e-286 986.5 653 74.7
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.4e-284 981.9 660 73.6
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 3.2e-284 981.5 651 74.3
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.7e-283 978.4 659 73.9
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 3.9e-282 974.5 652 74.7
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.6e-280 969.1 656 74.1
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.1e-280 968.8 667 72.6
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.0e-279 966.5 656 73.9
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.1e-279 964.9 656 73.8
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.2e-278 963.0 661 72.6
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.5e-278 962.6 655 73.1
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 9.8e-278 959.9 662 73.0
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 3.7e-277 958.0 661 73.4
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.1e-276 956.4 659 73.7
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-276 956.4 656 73.3
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.9e-276 955.7 655 73.9
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.4e-276 955.3 654 73.4
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.1e-276 954.5 656 73.2
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.0e-275 952.2 657 74.3
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.3e-274 948.7 552 83.2
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 6.6e-274 947.2 648 72.1
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.1e-273 946.4 653 72.0
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.2e-272 943.0 653 71.8
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.1e-271 939.9 651 71.4
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 3.1e-271 938.3 665 71.7
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 2.6e-270 935.3 657 71.8
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 2.6e-270 935.3 657 72.6
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 3.4e-270 934.9 662 71.8
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.7e-269 932.6 645 72.2
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 6.4e-269 930.6 653 70.0
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 3.6e-264 914.8 620 73.2
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.4e-263 912.9 668 68.9
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 6.8e-263 910.6 644 70.3
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 9.9e-262 906.7 618 73.0
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.1e-260 903.3 575 75.1
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.9e-260 902.5 652 69.9
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 3.2e-260 901.7 657 70.2
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 5.4e-260 901.0 659 70.0
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 7.1e-260 900.6 652 69.8
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 1.6e-259 899.4 657 69.7
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.6e-259 899.4 657 69.7
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 1.6e-259 899.4 657 69.7
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 3.5e-259 898.3 645 70.2
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 7.8e-259 897.1 563 76.2
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 4.3e-257 891.3 556 77.7
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 4.3e-257 891.3 556 77.7
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 7.3e-257 890.6 576 74.7
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 3.6e-256 888.3 659 68.9
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.2e-256 887.5 659 68.9
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.8e-255 885.9 603 70.0
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.4e-255 885.6 557 77.0
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 2.4e-255 885.6 631 70.7
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.2e-254 883.2 549 74.9
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 4.4e-254 881.3 526 79.7
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 8.4e-253 877.1 606 72.1
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 5.4e-252 874.4 672 66.2
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.7e-251 872.1 662 66.5
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.7e-251 872.1 662 66.5
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 3.5e-251 871.7 536 78.0
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.3e-250 869.8 684 64.8
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.6e-248 861.7 564 75.4
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 4.0e-247 858.2 630 68.3
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 8.4e-245 850.5 610 70.5
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 4.2e-244 848.2 656 66.5
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.0e-242 843.6 566 70.7
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 3.9e-242 841.6 572 73.1
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 3.3e-241 838.6 641 67.1
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.3e-240 836.6 667 65.4
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.3e-240 836.6 617 66.8
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 8.1e-240 833.9 592 69.3
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 4.0e-239 831.6 556 73.2
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 5.8e-238 827.8 671 64.4
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-237 826.2 654 66.7
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 6.4e-237 824.3 654 66.5
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 6.4e-237 824.3 654 66.5
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 7.1e-236 820.8 566 69.1
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 5.6e-233 811.2 667 63.1
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 9.6e-233 810.4 541 72.5
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 2.8e-232 808.9 546 72.0
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.8e-232 808.9 546 72.2
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 4.8e-232 808.1 588 68.0
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 6.2e-232 807.7 546 71.8
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.3e-231 804.7 518 74.9
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 4.5e-230 801.6 657 65.3
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.9e-229 798.9 657 62.7
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 9.3e-228 793.9 652 63.2
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 2.7e-227 792.3 656 64.9
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.7e-227 792.3 562 68.3
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 1.3e-226 790.0 555 69.2
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 7.4e-225 784.3 529 73.0
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 6.9e-223 777.7 664 60.7
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.0e-221 773.9 615 63.4
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 3.8e-221 771.9 665 60.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 9.7e-217 757.3 611 65.5
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.0e-210 737.3 619 62.0
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.9e-210 735.3 658 58.1
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 8.8e-210 734.2 651 64.1
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-209 733.8 552 67.0
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 2.5e-209 732.6 528 70.3
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 5.7e-209 731.5 651 60.1
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 3.7e-208 728.8 661 59.6
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 5.7e-201 704.9 658 58.5
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 3.8e-189 665.6 657 56.8
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.1e-187 659.8 627 56.8
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.2e-179 634.0 550 60.5
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 3.0e-178 629.4 660 53.0
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.7e-176 623.6 511 65.6
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 7.0e-175 618.2 676 51.6
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.9e-173 612.8 513 63.4
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 5.2e-170 602.1 426 68.8
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.8e-155 553.1 543 54.7
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.3e-152 544.3 565 50.6
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 9.2e-151 538.1 418 67.5
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 6.6e-149 531.9 335 73.7
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.1e-126 457.2 381 59.3
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.9e-125 453.0 285 73.7
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.8e-122 444.1 409 55.5
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 8.7e-101 372.1 349 57.9
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.3e-99 368.2 646 38.5
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.6e-78 298.1 621 33.5
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.5e-76 291.6 400 45.8
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 1.0e-56 225.7 216 53.2
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.4e-53 215.3 164 64.0
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 3.5e-41 174.1 152 56.6
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 1.2e-30 139.0 93 71.0
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 5.2e-29 133.7 343 29.2
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 8.9e-29 132.9 195 47.2
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 3.4e-28 131.0 76 80.3
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 3.3e-23 114.4 101 57.4
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.3e-19 102.4 138 50.7
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 3.4e-12 77.8 38 86.8
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 3.8e-11 74.3 149 41.6
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 2.7e-09 68.2 58 62.1


User provided reference genes

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