Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 2.8e-47 191.4 85 100.0
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 2.4e-46 188.3 85 97.6
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 3.8e-44 181.0 83 95.2
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.4e-43 178.3 83 97.6
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.4e-43 178.3 83 97.6
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.6e-42 175.6 82 96.3
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 2.7e-42 174.9 84 91.7
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.0e-41 172.9 86 90.7
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.3e-41 171.8 83 92.8
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 6.6e-41 170.2 89 84.3
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.1e-40 169.5 86 89.5
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 1.9e-40 168.7 84 91.7
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.9e-40 168.7 83 89.2
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.5e-40 168.3 88 88.6
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 4.3e-40 167.5 86 86.0
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 4.3e-40 167.5 86 86.0
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 7.3e-40 166.8 83 89.2
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-39 166.0 85 87.1
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.6e-39 165.6 81 87.7
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.1e-39 165.2 88 87.5
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.8e-39 164.9 85 88.2
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 2.8e-39 164.9 83 88.0
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 2.8e-39 164.9 84 86.9
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 3.6e-39 164.5 81 87.7
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.6e-39 164.5 81 87.7
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.6e-39 164.5 89 83.1
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 4.8e-39 164.1 86 88.4
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 6.2e-39 163.7 86 87.2
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 6.2e-39 163.7 83 85.5
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 6.2e-39 163.7 89 82.0
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 6.2e-39 163.7 89 82.0
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 8.1e-39 163.3 81 87.7
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 8.1e-39 163.3 81 87.7
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 1.1e-38 162.9 83 85.5
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.1e-38 162.9 83 85.5
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.4e-38 162.5 84 84.5
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.4e-38 162.5 85 81.2
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.8e-38 162.2 81 86.4
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-38 162.2 83 85.5
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-38 162.2 83 85.5
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-38 162.2 83 85.5
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.8e-38 162.2 89 79.8
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 1.8e-38 162.2 85 84.7
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 3.1e-38 161.4 81 86.4
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 3.1e-38 161.4 86 87.2
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.1e-38 161.4 85 82.4
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 3.1e-38 161.4 83 85.5
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 3.1e-38 161.4 85 83.5
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 4.0e-38 161.0 84 81.0
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 5.3e-38 160.6 83 84.3
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 5.3e-38 160.6 81 84.0
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 6.9e-38 160.2 89 83.1
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 6.9e-38 160.2 89 83.1
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 6.9e-38 160.2 88 81.8
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 6.9e-38 160.2 83 83.1
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 6.9e-38 160.2 85 83.5
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.5e-37 159.1 81 84.0
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 1.5e-37 159.1 85 81.2
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 1.5e-37 159.1 90 80.0
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 2.0e-37 158.7 82 87.8
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 2.6e-37 158.3 83 84.3
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 2.6e-37 158.3 83 84.3
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 2.6e-37 158.3 83 84.3
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 3.4e-37 157.9 81 84.0
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.4e-37 157.9 86 83.7
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 5.8e-37 157.1 83 84.3
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.7e-36 155.6 87 82.8
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 2.2e-36 155.2 82 81.7
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 2.2e-36 155.2 85 81.2
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 2.9e-36 154.8 81 82.7
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 2.9e-36 154.8 85 76.5
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 4.9e-36 154.1 86 80.2
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 4.9e-36 154.1 85 81.2
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 4.9e-36 154.1 84 81.0
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 4.9e-36 154.1 87 81.6
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 6.4e-36 153.7 90 80.0
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 8.4e-36 153.3 83 81.9
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 8.4e-36 153.3 83 81.9
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 8.4e-36 153.3 85 83.5
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 1.4e-35 152.5 84 83.3
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.4e-35 152.5 85 78.8
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.4e-35 152.5 85 78.8
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.9e-35 152.1 85 76.5
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.4e-35 151.8 85 77.6
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.4e-35 151.8 85 77.6
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.4e-35 151.8 85 77.6
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.4e-35 151.8 84 84.5
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 5.4e-35 150.6 83 80.7
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 5.4e-35 150.6 85 81.2
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 7.1e-35 150.2 81 82.7
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 1.6e-34 149.1 83 77.1
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.7e-34 148.3 80 80.0
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 3.5e-34 147.9 81 81.5
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 6.0e-34 147.1 83 79.5
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 6.0e-34 147.1 83 79.5
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 6.0e-34 147.1 83 79.5
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.0e-33 146.4 83 78.3
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 2.3e-33 145.2 83 79.5
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 2.3e-33 145.2 85 76.5
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.0e-33 144.8 82 75.6
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 3.9e-33 144.4 84 78.6
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 3.9e-33 144.4 83 77.1
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 3.9e-33 144.4 83 78.3
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 5.1e-33 144.1 83 78.3
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 6.7e-33 143.7 82 75.6
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.1e-32 142.9 79 81.0
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.1e-30 136.3 63 93.7
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 1.2e-29 132.9 76 75.0
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 3.4e-29 131.3 155 46.5
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 1.3e-28 129.4 95 65.3
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 6.4e-28 127.1 63 85.7
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 2.5e-24 115.2 83 62.7
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 3.3e-24 114.8 81 66.7
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 3.3e-24 114.8 58 87.9
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 9.6e-24 113.2 62 85.5
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 9.6e-24 113.2 61 83.6
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.6e-23 112.5 66 77.3
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 2.1e-23 112.1 63 84.1
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.1e-23 112.1 62 82.3
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 2.1e-23 112.1 57 87.7
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 4.8e-23 110.9 61 82.0
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.1e-22 109.8 64 84.4
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.4e-22 109.4 62 79.0
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.4e-22 108.6 61 77.0
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 6.9e-22 107.1 58 84.5
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 6.9e-22 107.1 58 84.5
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 4.5e-21 104.4 62 77.4
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 5.8e-21 104.0 59 74.6
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 5.8e-21 104.0 61 68.9
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.0e-20 103.2 59 78.0
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.0e-20 103.2 60 80.0
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 1.0e-20 103.2 62 79.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.2e-20 102.1 58 79.3
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 3.8e-20 101.3 60 78.3
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.4e-19 99.4 60 78.3
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 1.9e-19 99.0 57 80.7
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 1.9e-19 99.0 58 79.3
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.5e-19 98.6 58 79.3
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 5.5e-19 97.4 58 75.9
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.2e-18 96.3 63 73.0
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.1e-16 89.7 75 56.0
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.8e-15 85.1 62 64.5
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.8e-15 84.3 39 89.7
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 3.1e-14 81.6 73 49.3
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 1.1e-11 73.2 63 54.0


User provided reference genes

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