Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.8e-176 622.5 313 100.0
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.4e-117 426.8 272 81.2
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.9e-117 426.4 272 81.2
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.2e-111 407.1 300 70.7
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.7e-110 403.3 271 75.6
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 8.5e-110 401.0 271 75.3
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.5e-109 400.2 271 75.3
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 5.5e-109 398.3 271 74.9
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 7.2e-109 397.9 271 74.9
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 1.2e-108 397.1 271 74.2
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.6e-108 396.7 271 74.9
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 6.1e-108 394.8 271 73.8
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 8.0e-108 394.4 271 73.8
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.4e-107 393.7 271 73.8
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 8.8e-107 391.0 271 74.5
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.2e-106 390.6 271 73.1
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.6e-106 389.4 271 73.1
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 4.4e-106 388.7 271 72.3
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 5.7e-106 388.3 271 72.3
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.3e-105 387.1 271 73.1
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.1e-104 384.0 270 72.2
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 5.3e-104 381.7 289 69.2
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 7.0e-104 381.3 271 72.3
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 9.1e-104 380.9 271 70.5
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.6e-103 380.2 271 71.6
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.5e-103 378.6 271 70.8
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.7e-103 377.9 306 66.3
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.7e-102 376.7 271 71.2
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 3.8e-102 375.6 271 70.1
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 2.5e-101 372.9 271 71.2
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 3.2e-101 372.5 290 66.6
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 4.2e-101 372.1 271 69.7
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 5.5e-101 371.7 271 71.2
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 5.5e-101 371.7 271 70.1
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 7.2e-101 371.3 271 71.2
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 9.4e-101 370.9 271 69.7
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 9.4e-101 370.9 271 69.4
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 9.4e-101 370.9 271 69.7
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.2e-100 370.5 271 70.5
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 3.6e-100 369.0 271 69.4
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 6.1e-100 368.2 271 68.6
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.0e-99 367.5 271 68.3
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.0e-99 367.5 271 68.3
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.0e-99 367.5 271 68.3
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 1.0e-99 367.5 271 67.5
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.4e-99 367.1 271 69.0
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.8e-99 366.7 271 69.0
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.3e-99 366.3 271 68.6
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 2.3e-99 366.3 299 62.5
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 2.3e-99 366.3 271 69.4
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 3.0e-99 365.9 307 61.6
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 5.2e-99 365.2 272 68.8
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 8.8e-99 364.4 270 68.5
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 8.8e-99 364.4 271 69.0
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.2e-98 364.0 271 71.2
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.2e-98 364.0 319 60.2
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 2.6e-98 362.8 271 68.6
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 3.4e-98 362.5 269 69.5
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 4.4e-98 362.1 298 64.4
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 5.7e-98 361.7 271 67.9
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 5.7e-98 361.7 271 67.5
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 5.7e-98 361.7 282 67.0
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 7.5e-98 361.3 269 68.8
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.8e-97 359.4 271 67.9
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 3.7e-97 359.0 271 67.9
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 3.7e-97 359.0 271 67.2
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 4.8e-97 358.6 271 69.4
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.4e-96 357.1 294 65.0
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 3.1e-96 355.9 275 64.7
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 2.7e-95 352.8 309 60.5
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 3.5e-95 352.4 271 67.5
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.3e-94 350.5 303 62.0
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 6.6e-94 348.2 303 60.4
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 6.6e-94 348.2 268 67.9
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 6.6e-94 348.2 299 61.2
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 8.6e-94 347.8 282 64.2
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.9e-93 346.7 307 61.2
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 9.5e-93 344.4 346 56.6
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.8e-91 340.1 273 67.0
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 3.7e-89 332.4 331 55.6
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 9.2e-88 327.8 271 64.2
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 7.8e-87 324.7 204 83.3
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.7e-86 323.6 271 63.8
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 6.6e-86 321.6 203 82.8
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.1e-85 320.9 271 62.4
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.1e-85 320.9 271 64.9
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.8e-83 313.5 305 56.7
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 4.9e-81 305.4 269 58.4
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 9.2e-80 301.2 203 77.3
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 2.7e-79 299.7 204 76.0
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.0e-78 296.2 240 62.5
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.4e-75 287.3 203 71.9
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.2e-74 284.3 203 71.4
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.4e-74 282.7 271 58.3
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 7.5e-74 281.6 201 72.1
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 4.9e-73 278.9 305 50.8
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.9e-72 276.9 203 71.9
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.6e-71 273.9 273 53.5
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.9e-70 269.2 303 50.5
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.9e-70 269.2 183 76.5
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 6.6e-70 268.5 203 67.5
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.5e-69 266.5 271 52.4
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.1e-63 246.9 271 51.3
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 1.4e-59 234.2 252 49.6
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.1e-55 220.3 279 46.6
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 5.6e-53 212.2 154 72.7
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 3.1e-51 206.5 273 44.7
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.1e-45 188.0 139 66.9
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.8e-44 182.6 239 44.4
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.8e-43 180.6 151 60.3
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.6e-42 176.8 189 52.9
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 2.1e-36 157.1 295 35.6
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 2.0e-26 124.0 210 33.3
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 4.9e-25 119.4 81 72.8
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 6.5e-25 119.0 112 53.6
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 1.2e-23 114.8 75 74.7
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 1.3e-22 111.3 73 74.0
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.1e-21 108.2 85 67.1
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.9e-21 107.5 91 63.7
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.3e-20 104.8 122 50.8
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.7e-20 103.2 122 50.0
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 6.3e-20 102.4 111 52.3
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.4e-19 100.5 81 65.4
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 5.0e-17 92.8 90 51.1
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 3.2e-16 90.1 157 34.4
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 2.1e-07 60.8 85 37.6
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 1.0e-06 58.5 86 33.7
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 1.4e-06 58.2 141 28.4
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 1.8e-06 57.8 89 34.8
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 1.8e-06 57.8 96 35.4
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 5.1e-06 56.2 84 36.9
PRCOL_00004292 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 5.1e-06 56.2 91 34.1
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 5.1e-06 56.2 84 36.9
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 5.1e-06 56.2 84 35.7
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 6.7e-06 55.8 69 39.1
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 6.7e-06 55.8 123 27.6
Mapoly0048s0089 Marchantia polymorpha HOM05D003894 ORTHO05D004584 8.8e-06 55.5 96 32.3


User provided reference genes

Program Settings