Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 1.9e-33 145.2 70 100.0
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 5.3e-28 127.1 71 90.1
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.1e-24 115.2 70 87.1
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 2.0e-22 108.6 72 72.2
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.8e-21 104.8 72 76.4
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.8e-21 104.8 72 76.4
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.8e-21 104.0 72 76.4
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.2e-19 99.4 72 70.8
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 8.5e-18 93.2 76 65.8
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 2.5e-17 91.7 69 60.9
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 2.5e-17 91.7 69 60.9
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 2.5e-17 91.7 69 60.9
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.5e-17 91.7 72 68.1
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 2.5e-17 91.7 69 68.1
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 3.2e-17 91.3 67 62.7
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 9.4e-17 89.7 70 65.7
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 9.4e-17 89.7 70 65.7
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.0e-15 86.3 68 63.2
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 1.0e-15 86.3 68 67.6
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 2.3e-15 85.1 69 58.0
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 3.0e-15 84.7 68 64.7
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 3.9e-15 84.3 70 64.3
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 6.7e-15 83.6 68 60.3
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 8.8e-15 83.2 73 63.0
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 8.8e-15 83.2 73 63.0
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 8.8e-15 83.2 71 57.7
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.5e-14 82.4 70 60.0
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.0e-14 82.0 66 63.6
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.6e-14 81.6 70 60.0
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 5.7e-14 80.5 71 56.3
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 5.7e-14 80.5 70 58.6
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 7.4e-14 80.1 68 58.8
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.7e-14 79.7 69 60.9
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.2e-13 78.6 71 57.7
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 2.8e-13 78.2 68 54.4
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 2.8e-13 78.2 55 74.5
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.7e-13 77.8 71 54.9
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 3.7e-13 77.8 71 54.9
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.8e-13 77.4 71 54.9
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 8.2e-13 76.6 70 58.6
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.4e-12 75.9 71 60.6
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 3.1e-12 74.7 57 59.6
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 3.1e-12 74.7 71 54.9
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 4.1e-12 74.3 70 57.1
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 5.3e-12 73.9 49 75.5
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.6e-11 72.4 64 56.2
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 2.0e-11 72.0 49 73.5
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 3.5e-11 71.2 72 50.0
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.9e-11 70.5 70 54.3
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 5.9e-11 70.5 57 59.6
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 1.0e-10 69.7 49 69.4
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 1.0e-10 69.7 49 69.4
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.0e-10 69.7 70 52.9
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 1.0e-10 69.7 49 61.2
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.3e-10 69.3 70 52.9
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 2.2e-10 68.6 69 50.7
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 2.9e-10 68.2 68 52.9
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 3.8e-10 67.8 75 52.0
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 3.8e-10 67.8 64 53.1
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 5.0e-10 67.4 50 68.0
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 5.0e-10 67.4 75 52.0
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 5.0e-10 67.4 49 67.3
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 5.0e-10 67.4 54 59.3
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 5.0e-10 67.4 51 62.7
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 5.0e-10 67.4 70 51.4
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 5.0e-10 67.4 49 61.2
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 8.5e-10 66.6 69 55.1
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 1.1e-09 66.2 87 44.8
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 1.1e-09 66.2 70 48.6
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 1.5e-09 65.9 47 68.1
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.5e-09 65.9 71 52.1
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 2.5e-09 65.1 59 59.3
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 3.2e-09 64.7 69 49.3
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 3.2e-09 64.7 70 47.1
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 5.5e-09 63.9 50 64.0
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 7.2e-09 63.5 46 69.6
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 7.2e-09 63.5 67 46.3
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 7.2e-09 63.5 70 47.1
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 9.4e-09 63.2 68 50.0
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.2e-08 62.8 61 49.2
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 1.2e-08 62.8 65 52.3
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.6e-08 62.4 70 47.1
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 3.6e-08 61.2 69 46.4
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 6.1e-08 60.5 53 56.6
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 8.0e-08 60.1 65 47.7
HPP92_024568 Vanilla planifolia HOM05D006911 ORTHO05D006663 8.0e-08 60.1 69 42.0
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 1.4e-07 59.3 70 48.6
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.8e-07 58.9 49 59.2
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 1.8e-07 58.9 70 44.3
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 1.8e-07 58.9 56 46.4
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 2.3e-07 58.5 53 54.7
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 4.0e-07 57.8 34 79.4
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 4.0e-07 57.8 67 49.3
ATR0585G110 Amborella trichopoda HOM05D006911 ORTHO05D006663 8.8e-07 56.6 68 44.1
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 1.2e-06 56.2 50 60.0
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 1.2e-06 56.2 60 48.3
Aqoxy6G00602 Aquilegia oxysepala HOM05D006911 ORTHO05D006663 2.6e-06 55.1 68 45.6
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 3.3e-06 54.7 69 43.5
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 3.3e-06 54.7 65 47.7
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 4.4e-06 54.3 49 46.9
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 4.4e-06 54.3 45 53.3
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 5.7e-06 53.9 52 57.7
AT5G46295 Arabidopsis thaliana HOM05D010376 ORTHO05D006663 7.5e-06 53.5 46 50.0
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 7.5e-06 53.5 49 49.0
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 7.5e-06 53.5 49 49.0
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 9.7e-06 53.1 69 40.6
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 9.7e-06 53.1 49 46.9


User provided reference genes

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