Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.5e-159 565.5 299 100.0
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 7.3e-159 563.9 299 99.7
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 1.5e-143 513.1 299 92.0
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 9.5e-143 510.4 299 90.3
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 2.8e-142 508.8 299 90.0
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.7e-142 508.1 299 90.0
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 2.0e-140 502.7 300 88.7
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 4.9e-131 471.5 298 82.9
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 9.2e-130 467.2 300 81.0
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 6.6e-128 461.1 302 80.5
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.6e-126 456.4 296 81.1
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.1e-125 453.8 293 82.6
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.8e-125 453.0 297 78.1
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.0e-124 449.5 297 79.1
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 4.4e-124 448.4 295 80.3
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 2.9e-123 445.7 297 77.8
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 6.4e-123 444.5 298 77.5
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 8.4e-123 444.1 293 79.2
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.4e-122 443.4 297 78.8
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 1.9e-122 443.0 293 79.5
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 9.3e-122 440.7 297 79.5
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 1.2e-121 440.3 293 79.2
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.6e-121 439.9 293 78.8
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.6e-121 439.9 293 78.8
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 2.1e-121 439.5 292 77.7
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 6.0e-121 438.0 295 78.0
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.0e-120 437.2 296 80.1
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.0e-120 437.2 296 78.7
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.3e-120 436.8 293 77.8
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.3e-120 436.8 293 79.5
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 2.3e-120 436.0 300 77.7
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 6.6e-120 434.5 297 77.8
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 6.6e-120 434.5 300 76.0
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.5e-119 433.3 292 78.1
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.5e-119 432.6 300 76.7
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 3.3e-119 432.2 297 77.4
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 5.6e-119 431.4 301 77.4
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 5.6e-119 431.4 292 76.7
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 1.6e-118 429.9 299 76.3
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.1e-118 429.5 300 76.3
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.8e-118 428.3 298 77.5
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.8e-118 428.3 298 77.5
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 4.8e-118 428.3 292 78.4
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.1e-117 427.2 294 77.6
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-117 427.2 292 80.1
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.1e-117 427.2 298 76.8
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.4e-117 426.8 308 75.3
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 5.3e-117 424.9 301 76.1
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 5.3e-117 424.9 286 79.4
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 5.3e-117 424.9 293 75.8
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 1.5e-116 423.3 286 76.9
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 2.6e-116 422.5 297 75.4
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.2e-115 419.5 287 78.4
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.8e-115 418.7 295 75.6
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 6.4e-115 417.9 299 74.9
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.1e-114 417.2 294 75.5
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 5.4e-114 414.8 298 75.2
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 5.4e-114 414.8 296 75.0
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 9.3e-114 414.1 298 75.5
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 9.3e-114 414.1 333 70.9
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 1.6e-113 413.3 297 74.1
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.7e-113 412.5 275 79.3
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.7e-113 412.5 275 79.3
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 4.6e-113 411.8 306 75.2
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 6.0e-113 411.4 269 78.1
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 7.9e-113 411.0 355 66.5
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.3e-112 410.2 325 71.1
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 2.3e-112 409.5 283 75.6
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.3e-112 409.5 287 77.0
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 2.3e-112 409.5 239 86.2
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 3.9e-112 408.7 299 73.2
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 5.1e-112 408.3 288 74.7
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 5.1e-112 408.3 294 73.5
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 6.7e-112 407.9 299 73.9
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 8.7e-112 407.5 299 73.6
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 8.7e-112 407.5 287 75.6
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 1.5e-111 406.8 301 72.8
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.9e-111 406.4 293 74.4
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 2.5e-111 406.0 287 76.0
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 3.3e-111 405.6 297 72.1
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 3.3e-111 405.6 296 74.3
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 5.6e-111 404.8 288 76.4
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.8e-110 402.5 294 72.8
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 6.2e-110 401.4 293 73.0
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 6.2e-110 401.4 295 73.2
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 8.1e-110 401.0 310 69.7
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 1.1e-109 400.6 293 74.1
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 1.1e-109 400.6 293 74.1
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.1e-109 400.6 300 73.3
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 3.1e-109 399.1 299 69.2
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 3.1e-109 399.1 294 74.1
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 3.1e-109 399.1 288 76.4
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 3.1e-109 399.1 348 64.7
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 6.9e-109 397.9 293 73.7
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 6.9e-109 397.9 293 73.7
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 9.0e-109 397.5 296 73.6
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 9.0e-109 397.5 348 64.7
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.2e-108 397.1 300 71.0
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.2e-108 397.1 300 71.3
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 1.2e-108 397.1 270 75.9
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.5e-108 396.7 293 72.7
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 1.5e-108 396.7 294 73.8
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 5.8e-108 394.8 293 73.0
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.7e-107 393.3 290 73.8
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.2e-107 392.9 287 75.6
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 3.8e-107 392.1 293 71.0
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 4.9e-107 391.7 294 71.4
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 4.9e-107 391.7 300 70.0
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 6.4e-107 391.3 287 75.3
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 2.1e-105 386.3 299 68.9
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 7.4e-103 377.9 295 68.5
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 2.1e-102 376.3 297 67.7
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 4.8e-102 375.2 299 69.6
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 6.2e-102 374.8 295 68.1
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 3.1e-101 372.5 301 68.1
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 4.0e-101 372.1 294 68.7
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 1.2e-100 370.5 232 80.6
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 2.6e-100 369.4 287 71.4
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.7e-99 366.7 331 64.0
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 2.2e-99 366.3 354 60.7
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.1e-98 364.0 287 70.0
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 2.5e-98 362.8 203 93.1
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 2.5e-98 362.8 271 72.7
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.3e-95 352.4 227 78.9
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.6e-94 350.1 297 66.7
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 4.8e-94 348.6 227 78.9
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 3.4e-92 342.4 231 77.9
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.0e-91 340.9 267 67.4
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.3e-88 329.7 298 63.4
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.0e-84 316.6 220 75.9
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.2e-81 307.4 221 68.8
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.7e-81 305.4 231 71.4
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 6.7e-80 301.6 282 59.9
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 8.8e-80 301.2 230 70.9
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.5e-79 300.4 201 74.1
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 1.5e-79 300.4 182 85.2
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 2.6e-79 299.7 295 58.6
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 5.7e-79 298.5 215 68.8
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.5e-74 283.1 265 61.5
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 4.7e-73 278.9 266 60.9
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.5e-71 273.9 186 77.4
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 7.4e-71 271.6 198 73.2
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.0e-56 224.6 181 66.9
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 2.6e-55 219.9 226 52.2
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 2.6e-55 219.9 237 48.9
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.4e-53 213.4 150 72.7
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 2.8e-49 199.9 237 48.1
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 3.4e-39 166.4 217 43.3
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.7e-38 164.1 162 54.9
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 9.5e-26 121.7 287 37.3
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 4.0e-24 116.3 69 85.5
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 8.3e-22 108.6 59 91.5
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 7.1e-21 105.5 64 85.9
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.1e-16 91.7 121 49.6
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.3e-11 74.7 48 70.8
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.1e-10 71.6 56 67.9
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 2.9e-06 57.0 29 86.2
Glyma.15G250600 Glycine max HOM05D004655 ORTHO05D215793 6.4e-06 55.8 32 78.1


User provided reference genes

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