Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 1.7e-290 1001.9 484 100.0
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 3.5e-272 941.0 484 93.6
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 9.0e-268 926.4 484 90.3
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 7.6e-267 923.3 484 91.1
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 4.6e-264 914.1 484 89.5
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.1e-260 901.4 486 90.1
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.0e-259 898.7 500 88.4
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.6e-256 889.0 469 89.3
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.1e-249 866.3 465 90.3
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 6.1e-248 860.5 488 83.4
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 1.8e-247 859.0 488 83.6
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 7.4e-246 853.6 495 81.8
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.3e-245 852.8 495 81.8
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 5.9e-243 844.0 487 81.5
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 1.0e-242 843.2 487 81.9
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 2.9e-242 841.6 491 80.7
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 6.5e-242 840.5 485 81.9
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 3.2e-241 838.2 488 82.2
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 9.4e-241 836.6 485 82.5
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 4.7e-240 834.3 488 81.6
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 4.7e-240 834.3 491 80.2
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 2.3e-239 832.0 488 81.4
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 8.8e-239 830.1 491 80.0
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 2.0e-238 828.9 487 80.5
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 2.6e-238 828.6 487 80.7
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 3.3e-238 828.2 487 80.7
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 9.7e-238 826.6 487 80.7
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 9.7e-238 826.6 487 80.9
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.3e-237 826.2 487 80.9
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.2e-237 825.5 487 80.3
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 2.2e-237 825.5 487 81.1
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.8e-237 825.1 487 80.1
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 2.8e-237 825.1 487 81.5
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 4.8e-237 824.3 488 80.1
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 4.8e-237 824.3 487 79.7
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.2e-237 823.5 487 80.1
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 1.8e-236 822.4 487 79.3
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 4.1e-236 821.2 487 79.7
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 9.1e-236 820.1 487 79.9
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.6e-235 819.3 487 79.7
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.6e-235 818.5 487 79.9
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 5.9e-235 817.4 488 79.5
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 5.9e-235 817.4 523 76.1
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 2.2e-234 815.5 512 77.9
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 8.5e-234 813.5 487 78.9
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 8.5e-234 813.5 490 79.0
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.1e-233 813.1 487 79.3
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.1e-233 813.1 487 79.3
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 2.5e-233 812.0 488 78.9
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 4.2e-233 811.2 487 80.3
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 8.0e-232 807.0 488 78.9
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 2.3e-231 805.4 487 79.1
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 3.0e-231 805.1 490 78.8
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 5.2e-231 804.3 490 77.8
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.5e-230 802.7 487 79.1
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.5e-230 802.7 487 77.4
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 2.0e-230 802.4 572 69.4
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 7.5e-230 800.4 487 77.0
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 1.3e-229 799.7 489 77.9
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 3.7e-229 798.1 489 76.9
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 8.2e-229 797.0 485 77.3
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.8e-228 795.8 581 68.2
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.8e-228 795.8 488 78.7
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 7.7e-227 790.4 486 77.0
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 3.8e-226 788.1 486 75.3
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.5e-226 787.3 461 80.7
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 8.5e-226 786.9 485 77.1
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 1.1e-225 786.6 485 75.9
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 2.7e-224 781.9 487 77.0
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 6.1e-224 780.8 489 75.9
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.0e-223 780.0 485 75.9
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 1.8e-223 779.2 484 76.0
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 4.0e-223 778.1 492 76.2
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 4.0e-223 778.1 571 68.5
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 1.2e-222 776.5 478 76.6
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 3.4e-222 775.0 489 76.1
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 2.2e-221 772.3 485 75.5
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 4.8e-221 771.2 494 75.5
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.1e-220 770.0 486 74.7
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 3.5e-219 765.0 488 74.6
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.5e-217 759.6 486 73.5
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.5e-217 759.6 486 73.5
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 1.9e-217 759.2 486 73.9
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 7.2e-217 757.3 486 73.5
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 2.8e-216 755.4 486 72.6
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 4.7e-216 754.6 486 72.8
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 8.0e-216 753.8 487 72.9
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 8.0e-216 753.8 486 72.8
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 8.0e-216 753.8 487 72.9
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 2.3e-215 752.3 486 72.2
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 5.2e-215 751.1 487 72.3
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 5.2e-215 751.1 487 72.3
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 5.2e-215 751.1 485 73.4
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 3.1e-212 741.9 510 69.2
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 7.0e-212 740.7 490 72.0
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 7.0e-212 740.7 484 75.0
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 7.3e-209 730.7 411 83.9
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.2e-208 729.9 544 66.0
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 1.4e-207 726.5 411 84.2
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.6e-203 713.0 487 70.6
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 3.5e-203 711.8 573 62.8
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 3.3e-201 705.3 496 68.5
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 1.2e-200 703.4 510 67.1
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 2.8e-200 702.2 598 60.2
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 8.3e-197 690.6 455 74.3
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 5.1e-186 654.8 408 75.5
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 8.6e-186 654.1 436 71.1
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 4.7e-184 648.3 488 63.3
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 2.6e-182 642.5 489 63.4
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 6.4e-181 637.9 374 81.6
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 4.1e-180 635.2 500 60.4
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 5.2e-175 618.2 360 82.2
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.0e-174 616.3 376 75.3
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.1e-172 610.5 376 74.7
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.6e-168 596.7 345 80.3
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 7.1e-164 581.3 325 86.5
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.7e-163 579.3 327 83.8
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.8e-162 576.6 327 84.7
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 2.8e-160 569.3 530 54.2
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 4.9e-149 531.9 325 78.5
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 4.2e-148 528.9 332 77.1
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.2e-147 527.3 323 78.0
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 4.6e-147 525.4 359 71.6
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 4.8e-144 515.4 351 72.1
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.9e-143 511.5 303 79.2
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-132 477.6 326 72.7
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.0e-106 389.4 222 82.0
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 7.5e-105 385.2 497 42.5
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.1e-100 371.3 435 44.8
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 9.2e-95 351.7 211 80.1
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.3e-93 347.8 438 44.5
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 4.7e-91 339.3 235 67.2
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.7e-80 303.1 187 79.1
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.1e-78 297.4 159 88.1
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.1e-78 297.4 159 88.1
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 9.5e-76 288.5 159 86.8
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 2.5e-68 263.8 145 82.1
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.4e-55 221.5 422 34.1
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.0e-45 188.7 106 82.1
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.9e-44 184.5 106 84.0
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-44 184.1 94 92.6
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.4e-44 182.6 93 92.5
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 6.9e-42 176.0 146 58.2
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 4.9e-40 169.9 119 70.6
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.2e-33 148.7 91 74.7
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.1e-26 124.0 67 86.6
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 6.5e-24 116.3 87 63.2
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 5.5e-23 113.2 76 75.0
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-18 99.0 65 66.2
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.0e-16 92.4 70 68.6
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 7.2e-15 86.3 67 64.2
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 1.1e-10 72.4 122 40.2
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 2.9e-08 64.3 130 34.6


User provided reference genes

Program Settings