Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.4e-170 602.8 294 100.0
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.0e-149 531.9 295 89.5
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.5e-148 529.6 295 89.2
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.9e-148 529.3 295 88.8
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.9e-148 529.3 295 87.8
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 7.4e-140 500.7 294 85.0
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 3.8e-120 435.3 303 70.3
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 4.4e-116 421.8 295 69.8
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 5.7e-116 421.4 304 68.4
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 7.5e-116 421.0 289 70.2
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 4.8e-115 418.3 293 70.3
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.5e-111 406.8 294 69.0
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.2e-111 405.2 288 68.8
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 9.4e-111 404.1 295 65.8
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 5.4e-106 388.3 291 66.7
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 1.6e-105 386.7 298 64.1
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 3.5e-105 385.6 308 64.6
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 3.5e-105 385.6 303 63.0
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 4.5e-105 385.2 299 64.2
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 5.9e-105 384.8 282 65.2
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 5.9e-105 384.8 296 66.2
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.7e-104 383.3 282 67.0
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 2.3e-104 382.9 294 66.0
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 3.8e-104 382.1 319 62.7
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 8.6e-104 380.9 283 66.1
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 8.6e-104 380.9 282 65.6
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.1e-103 380.6 295 66.8
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.5e-103 380.2 282 64.9
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 5.6e-103 378.3 282 66.0
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 7.3e-103 377.9 282 65.6
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.2e-102 377.1 291 64.9
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 8.0e-102 374.4 291 63.2
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.4e-101 373.6 290 63.8
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.4e-101 373.6 316 63.3
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 2.0e-100 369.8 290 62.1
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.3e-99 367.1 282 63.5
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.7e-99 366.7 300 61.3
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 1.7e-99 366.7 299 62.2
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 6.4e-99 364.8 300 60.7
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 7.0e-98 361.3 285 62.8
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.6e-97 360.1 290 63.1
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 2.0e-97 359.8 297 62.3
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 2.7e-97 359.4 291 61.5
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 2.7e-97 359.4 292 62.3
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 4.6e-97 358.6 329 58.7
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 5.9e-97 358.2 270 67.8
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 5.9e-97 358.2 292 62.0
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 3.9e-96 355.5 294 62.2
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 8.6e-96 354.4 283 62.9
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 2.5e-95 352.8 285 62.8
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 3.3e-95 352.4 288 62.8
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 4.3e-95 352.1 270 64.8
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 4.3e-95 352.1 294 61.6
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 4.3e-95 352.1 285 63.2
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.6e-94 350.1 282 62.8
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 4.7e-94 348.6 297 59.9
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.8e-93 346.7 300 60.0
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 3.1e-93 345.9 304 59.2
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 6.8e-93 344.7 286 61.2
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 8.9e-93 344.4 297 58.6
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 2.6e-92 342.8 289 58.5
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 7.5e-92 341.3 282 59.6
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 7.5e-92 341.3 295 60.3
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 2.2e-91 339.7 295 56.9
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 2.9e-91 339.3 288 60.1
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 4.9e-91 338.6 286 59.8
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 6.4e-91 338.2 264 64.4
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 2.4e-90 336.3 282 59.2
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 9.2e-90 334.3 297 58.2
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 6.0e-89 331.6 286 58.7
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.7e-88 330.1 273 61.9
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 6.6e-88 328.2 285 57.5
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.5e-87 327.0 286 58.0
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 4.3e-87 325.5 217 71.0
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 4.3e-87 325.5 274 62.0
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.1e-85 320.9 294 55.4
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 2.2e-83 313.2 282 57.8
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 1.2e-81 307.4 276 58.0
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 6.0e-81 305.1 288 55.6
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 7.8e-81 304.7 288 55.9
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 7.8e-81 304.7 315 53.3
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.0e-80 304.3 277 57.4
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.2e-78 297.4 299 52.5
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 2.8e-78 296.2 338 48.5
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 2.6e-76 289.7 271 55.0
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 8.4e-75 284.6 246 58.5
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 7.1e-74 281.6 174 74.7
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 3.5e-73 279.3 289 52.6
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.3e-72 277.3 297 51.5
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 2.1e-70 270.0 175 71.4
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.3e-67 260.8 173 71.7
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.9e-66 256.9 303 49.2
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 6.0e-65 251.9 292 50.0
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.3e-62 244.2 159 77.4
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 4.8e-62 242.3 151 76.8
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 2.4e-61 240.0 282 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 4.0e-61 239.2 288 47.2
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.4e-60 236.1 159 69.8
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.4e-58 230.7 286 45.5
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 1.8e-56 223.8 277 46.9
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.3e-55 219.2 291 41.2
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 4.8e-54 215.7 303 44.2
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 6.2e-54 215.3 316 44.0
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 2.4e-53 213.4 281 43.8
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 9.0e-53 211.5 270 45.9
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 2.6e-52 209.9 293 43.3
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.4e-50 204.1 123 78.0
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.2e-50 202.6 118 78.8
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 1.2e-49 201.1 184 58.2
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 6.0e-49 198.7 292 41.1
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 6.2e-46 188.7 216 47.2
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 8.1e-46 188.3 102 85.3
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 9.0e-45 184.9 289 37.0
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 3.4e-44 183.0 294 38.4
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 5.8e-44 182.2 291 41.2
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.2e-43 180.3 331 37.2
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 4.9e-43 179.1 189 50.3
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 1.1e-42 177.9 98 83.7
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.2e-41 174.5 289 39.8
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 4.3e-39 166.0 95 81.1
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.4e-37 161.0 209 43.5
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 4.1e-37 159.5 284 35.9
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.9e-37 158.7 115 61.7
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 1.2e-36 157.9 207 43.5
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 3.3e-31 139.8 122 57.4
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 6.3e-30 135.6 199 41.2
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 3.1e-29 133.3 161 46.6
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.1e-29 133.3 143 51.7
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.1e-29 133.3 143 51.7
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.2e-25 121.3 97 58.8
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.4e-21 107.1 57 84.2
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.5e-18 97.1 50 90.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 1.2e-12 78.2 50 70.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.3e-11 74.7 111 39.6
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.0e-08 65.1 71 47.9
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 2.3e-08 63.9 94 40.4
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 4.0e-08 63.2 64 51.6
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 4.8e-06 56.2 62 50.0
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 8.2e-06 55.5 60 51.7


User provided reference genes

Program Settings