Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 3.8e-137 491.5 245 100.0
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 2.3e-118 429.1 245 85.3
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 5.6e-117 424.5 245 84.9
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 1.9e-93 346.3 250 72.0
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 7.4e-93 344.4 233 70.4
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.3e-92 343.6 263 70.3
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 2.2e-92 342.8 241 69.3
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 1.1e-91 340.5 248 71.0
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 3.1e-91 339.0 243 71.6
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 5.3e-91 338.2 240 68.8
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 2.6e-90 335.9 240 68.3
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 2.6e-90 335.9 238 70.6
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 5.9e-90 334.7 253 67.6
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 5.9e-90 334.7 249 67.1
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 5.9e-90 334.7 245 70.2
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 1.3e-89 333.6 226 71.7
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.3e-89 333.6 243 68.3
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.9e-88 329.7 226 70.4
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 3.2e-88 328.9 243 67.5
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 4.2e-88 328.6 242 68.2
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 5.5e-88 328.2 232 69.4
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 5.5e-88 328.2 242 68.2
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 9.4e-88 327.4 225 68.9
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.4e-88 327.4 246 70.3
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 9.4e-88 327.4 242 67.8
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.2e-87 327.0 243 67.1
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 1.2e-87 327.0 252 67.9
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.1e-87 326.2 243 69.5
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 2.7e-87 325.9 246 67.5
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 2.7e-87 325.9 245 66.9
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.7e-87 325.9 243 70.0
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 3.6e-87 325.5 223 70.9
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 3.6e-87 325.5 252 65.1
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 4.6e-87 325.1 246 68.7
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 4.6e-87 325.1 215 73.0
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 6.1e-87 324.7 228 69.3
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 6.1e-87 324.7 228 69.3
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 7.9e-87 324.3 251 62.9
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 1.0e-86 323.9 228 70.2
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.0e-86 323.9 233 67.8
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 1.4e-86 323.6 244 66.8
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.4e-86 323.6 224 72.8
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.4e-86 323.6 233 68.2
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.8e-86 323.2 243 65.8
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 6.7e-86 321.2 228 69.3
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.1e-85 320.5 243 65.0
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 1.1e-85 320.5 247 64.4
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 1.1e-85 320.5 236 67.8
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 2.6e-85 319.3 247 64.4
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 5.7e-85 318.2 228 68.9
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 5.7e-85 318.2 245 64.5
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 9.7e-85 317.4 245 65.7
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 2.2e-84 316.2 239 66.5
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 3.7e-84 315.5 236 67.4
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 4.8e-84 315.1 221 71.0
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 4.8e-84 315.1 245 65.7
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.4e-83 313.5 247 64.0
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.2e-82 310.5 228 69.3
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 1.5e-82 310.1 222 68.0
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 1.3e-81 307.0 228 65.8
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 1.7e-81 306.6 228 67.1
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 2.2e-81 306.2 234 65.0
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 5.0e-81 305.1 245 63.7
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 6.5e-81 304.7 248 64.1
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 6.5e-81 304.7 246 61.4
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.4e-80 303.5 245 61.2
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.9e-80 303.1 246 61.0
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 1.9e-80 303.1 230 66.5
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 4.2e-80 302.0 229 67.7
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 5.5e-80 301.6 219 68.9
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 9.4e-80 300.8 229 65.9
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.2e-79 300.4 236 62.7
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 1.2e-79 300.4 245 61.6
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 1.2e-79 300.4 246 63.0
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 1.6e-79 300.1 226 65.0
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 1.6e-79 300.1 238 63.4
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 2.7e-79 299.3 242 63.2
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 4.7e-79 298.5 228 64.9
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 3.0e-78 295.8 221 66.5
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 3.9e-78 295.4 227 63.4
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 8.8e-78 294.3 232 64.2
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.5e-77 293.5 253 59.3
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.0e-77 293.1 227 65.2
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 3.3e-77 292.4 242 60.7
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 1.4e-75 287.0 229 62.9
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 4.1e-75 285.4 235 63.8
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 5.3e-75 285.0 215 66.5
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 5.3e-75 285.0 215 66.5
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 8.5e-73 277.7 221 63.3
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 1.5e-72 276.9 228 63.6
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.5e-72 276.2 169 82.8
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 5.5e-72 275.0 235 60.4
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.2e-72 274.6 168 82.7
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 9.4e-72 274.2 238 61.8
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 4.4e-61 238.8 233 54.5
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 1.3e-60 237.3 213 58.2
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 4.1e-59 232.3 234 51.3
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 7.7e-58 228.0 195 63.1
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 6.1e-55 218.4 128 75.8
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 8.0e-55 218.0 128 77.3
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 6.8e-54 214.9 201 58.2
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 4.4e-53 212.2 187 58.8
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.3e-52 210.7 128 73.4
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.2e-52 209.9 128 72.7
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 7.0e-51 204.9 198 56.1
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 5.9e-50 201.8 176 61.9
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 3.8e-49 199.1 162 63.6
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 7.0e-43 178.3 254 38.2
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 3.9e-41 172.6 104 75.0
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.6e-39 167.2 109 70.6
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 2.8e-39 166.4 134 58.2
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 2.8e-39 166.4 155 54.8
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 1.6e-34 150.6 144 54.2
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 2.5e-32 143.3 114 59.6
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 7.3e-32 141.7 154 48.7
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.6e-31 140.6 79 82.3
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.6e-31 139.4 77 83.1
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.4e-30 137.5 134 56.7
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.1e-30 136.3 78 82.1
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.8e-30 135.2 79 81.0
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-29 134.4 79 79.7
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-29 134.4 79 79.7
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.0e-29 133.7 78 80.8
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.0e-29 133.7 78 80.8
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 2.7e-26 123.2 115 56.5
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 1.9e-24 117.1 67 76.1
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 2.5e-24 116.7 143 49.7
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 6.8e-22 108.6 66 69.7
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 9.2e-19 98.2 103 51.5
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 4.6e-18 95.9 85 61.2
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 1.0e-17 94.7 99 49.5
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 1.7e-17 94.0 101 50.5
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 1.7e-17 94.0 71 64.8
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.1e-16 91.3 89 53.9
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 2.5e-16 90.1 55 67.3
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 3.3e-16 89.7 58 62.1
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 5.6e-16 89.0 49 79.6
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 1.2e-15 87.8 64 64.1
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.4e-14 84.3 51 72.5
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 1.3e-12 77.8 175 29.1
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 1.3e-12 77.8 169 32.5
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.9e-11 73.9 67 52.2
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.9e-11 73.9 169 26.6
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-10 71.2 165 27.3
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 1.6e-10 70.9 162 28.4
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 2.1e-10 70.5 164 26.8
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 3.5e-10 69.7 174 27.6
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 4.3e-08 62.8 115 32.2
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 4.3e-08 62.8 205 23.9
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 5.6e-08 62.4 68 45.6
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.1e-07 60.5 132 28.0
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 3.6e-07 59.7 35 71.4


User provided reference genes

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