Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 4.8e-230 800.8 409 100.0
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 2.3e-208 728.8 404 91.6
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 8.9e-208 726.9 404 91.6
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 1.5e-207 726.1 403 91.8
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 1.3e-198 696.4 404 88.6
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.3e-187 659.1 408 82.6
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 3.6e-185 651.7 405 82.7
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 3.1e-184 648.7 407 80.6
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 2.0e-183 646.0 408 80.1
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 2.6e-183 645.6 408 80.4
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 7.5e-183 644.0 390 82.6
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 9.9e-183 643.7 406 80.8
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.3e-182 643.3 408 80.6
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.9e-182 642.1 409 80.0
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 2.4e-181 639.0 405 79.5
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 3.2e-181 638.6 412 78.2
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 4.1e-181 638.3 408 78.4
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 4.1e-181 638.3 410 80.0
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 4.1e-181 638.3 409 78.7
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 5.4e-181 637.9 408 78.4
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 5.4e-181 637.9 372 84.7
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 9.2e-181 637.1 408 78.4
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.2e-180 636.7 403 78.9
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.2e-180 636.7 403 79.2
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.6e-180 636.3 403 79.7
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.1e-180 636.0 409 79.0
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 4.6e-180 634.8 403 79.4
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 6.0e-180 634.4 409 78.0
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.0e-179 633.6 403 79.4
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.0e-179 633.6 403 79.4
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 1.7e-179 632.9 406 79.8
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.7e-179 632.9 405 79.0
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.7e-179 632.9 408 78.9
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.3e-179 632.5 403 79.2
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 6.6e-179 630.9 403 80.1
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 8.6e-179 630.6 403 79.2
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.9e-178 629.4 403 78.7
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.9e-178 629.4 408 78.7
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 3.3e-178 628.6 369 83.7
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 4.3e-178 628.2 403 81.9
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 4.3e-178 628.2 400 80.2
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 9.5e-178 627.1 369 84.8
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.2e-177 626.7 405 79.0
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.2e-177 626.7 407 79.1
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 1.6e-177 626.3 404 78.5
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 3.6e-177 625.2 405 78.5
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 4.7e-177 624.8 404 78.5
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 4.7e-177 624.8 403 78.2
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.4e-176 623.2 406 79.3
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.8e-176 622.9 405 78.3
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 5.2e-176 621.3 372 83.1
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 5.2e-176 621.3 407 77.9
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 2.6e-175 619.0 405 78.5
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 3.4e-175 618.6 382 80.6
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 3.4e-175 618.6 376 81.1
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 3.4e-175 618.6 397 78.3
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 4.4e-175 618.2 405 78.0
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 4.4e-175 618.2 403 77.7
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.8e-175 617.8 400 78.0
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 1.7e-174 616.3 407 76.2
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.9e-174 615.5 403 77.7
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.8e-174 615.1 403 77.9
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 4.9e-174 614.8 383 80.4
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 6.4e-174 614.4 402 77.4
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 1.1e-173 613.6 406 77.6
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.4e-173 612.5 405 78.0
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 3.2e-173 612.1 373 81.5
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.1e-173 610.9 404 77.7
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.6e-172 609.8 372 80.1
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.1e-172 609.4 406 76.6
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 3.5e-172 608.6 405 77.0
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 4.6e-172 608.2 406 76.6
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 6.0e-172 607.8 406 76.6
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 1.3e-171 606.7 403 76.4
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 3.0e-171 605.5 406 76.4
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 8.7e-171 604.0 406 75.4
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.1e-170 603.6 412 74.0
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.5e-170 603.2 411 74.2
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.3e-170 602.1 365 81.4
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 4.3e-170 601.7 412 73.8
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 4.3e-170 601.7 412 74.5
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 5.6e-170 601.3 409 74.3
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 5.6e-170 601.3 371 79.0
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 9.6e-170 600.5 410 75.6
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 1.6e-169 599.7 411 75.9
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.6e-169 599.7 409 73.8
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.6e-169 599.7 411 74.7
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 8.1e-169 597.4 407 75.2
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.1e-168 595.5 411 74.0
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 6.9e-168 594.3 407 74.7
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.9e-168 594.3 403 74.9
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 9.0e-168 594.0 373 78.3
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 2.0e-167 592.8 404 74.5
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 2.0e-167 592.8 404 74.5
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 2.0e-167 592.8 404 74.5
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 2.0e-167 592.8 407 74.4
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 2.6e-167 592.4 416 75.0
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.4e-167 592.0 403 74.9
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 4.4e-167 591.7 407 74.2
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 4.4e-167 591.7 407 74.4
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 4.4e-167 591.7 407 74.4
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 7.6e-167 590.9 373 78.6
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 9.9e-167 590.5 403 74.9
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 1.7e-166 589.7 404 74.5
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 2.9e-166 589.0 410 73.2
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 3.8e-166 588.6 405 77.0
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 8.4e-166 587.4 407 73.7
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 9.3e-165 583.9 403 74.2
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 9.3e-165 583.9 353 81.0
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.6e-164 583.2 406 73.6
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 2.7e-164 582.4 404 74.0
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 7.8e-164 580.9 353 80.5
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.3e-163 580.1 409 72.6
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 5.1e-163 578.2 404 72.0
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 5.1e-163 578.2 360 83.6
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 5.1e-163 578.2 406 73.4
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.4e-160 569.3 411 72.5
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.9e-160 567.8 411 71.8
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 2.0e-159 566.2 403 71.5
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 1.7e-158 563.1 341 80.9
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 2.2e-158 562.8 454 67.0
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 4.2e-157 558.5 404 70.5
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 5.4e-157 558.1 438 67.8
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 1.6e-156 556.6 372 74.2
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 7.9e-156 554.3 411 72.3
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 9.6e-154 547.4 412 68.4
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 6.2e-153 544.7 433 67.0
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.4e-152 543.5 315 84.4
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 9.0e-152 540.8 403 70.7
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.9e-149 533.1 400 67.8
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.5e-146 522.7 356 71.3
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 3.3e-146 522.3 436 67.0
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 6.2e-145 518.1 413 67.8
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 1.1e-144 517.3 302 84.4
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.7e-142 510.0 403 64.3
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.4e-141 506.9 370 71.9
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 9.3e-141 504.2 372 67.5
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 2.1e-140 503.1 351 72.4
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.5e-140 502.3 292 84.6
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.2e-135 487.3 375 65.9
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 2.9e-134 482.6 407 65.8
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 7.9e-132 474.6 432 61.8
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 1.0e-131 474.2 402 60.9
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.5e-130 469.5 332 73.8
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 3.3e-130 469.2 410 61.0
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 8.2e-129 464.5 408 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.3e-126 457.2 390 59.7
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.8e-126 455.7 372 65.1
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 8.5e-118 427.9 241 88.0
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.1e-112 407.9 335 63.6
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.5e-101 373.2 251 73.7
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.5e-101 372.1 211 87.7
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.8e-99 367.1 211 84.4
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.1e-93 347.8 395 48.9
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 8.9e-91 338.2 364 50.3
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 1.6e-87 327.4 273 60.8
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 5.0e-86 322.4 370 48.9
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.2e-82 311.2 349 53.9
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 7.1e-72 275.4 178 75.3
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.7e-65 254.2 222 61.7
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.4e-64 251.1 331 42.9
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 1.3e-62 244.6 131 90.8
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 5.1e-62 242.7 282 46.1
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 7.1e-56 222.2 304 41.8
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 2.1e-55 220.7 214 55.1
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 4.4e-50 203.0 120 80.8
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.9e-49 199.5 182 57.7
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.1e-38 162.9 404 33.2
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 3.3e-37 160.2 133 65.4
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 3.7e-28 130.2 88 70.5
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 9.0e-27 125.6 77 76.6
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.5e-24 117.5 69 84.1
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.9e-22 110.2 75 70.7
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.4e-16 91.7 84 57.1
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.4e-16 91.7 119 47.9
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 2.3e-14 84.3 59 67.8
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 1.1e-13 82.0 60 68.3
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.5e-13 81.6 54 64.8
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 2.2e-09 67.8 85 44.7
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 3.2e-08 63.9 39 71.8


User provided reference genes

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