Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 4.9e-54 214.2 103 100.0
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.8e-48 195.7 101 91.1
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 8.9e-48 193.4 101 89.1
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.2e-47 193.0 101 89.1
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.5e-47 192.6 101 90.1
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.0e-47 192.2 101 88.1
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.0e-47 192.2 101 88.1
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.6e-47 191.8 101 88.1
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 9.8e-47 189.9 101 87.1
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.9e-46 188.3 101 87.1
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.9e-43 177.9 99 81.8
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 5.0e-43 177.6 99 81.8
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 2.1e-41 172.2 102 78.4
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 2.1e-41 172.2 102 78.4
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 2.1e-41 172.2 102 78.4
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 3.6e-41 171.4 101 79.2
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 3.6e-41 171.4 101 79.2
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 8.0e-41 170.2 100 82.0
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 8.0e-41 170.2 100 82.0
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 8.0e-41 170.2 100 82.0
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 8.0e-41 170.2 96 82.3
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.8e-40 169.1 92 84.8
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.3e-40 168.7 96 81.2
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 3.1e-40 168.3 99 80.8
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 5.2e-40 167.5 107 76.6
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 5.2e-40 167.5 95 82.1
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 6.8e-40 167.2 103 79.6
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 6.8e-40 167.2 103 79.6
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 8.9e-40 166.8 96 81.2
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.0e-39 165.6 103 79.6
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.0e-39 165.6 96 80.2
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 3.4e-39 164.9 96 80.2
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.4e-39 164.5 96 79.2
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 5.8e-39 164.1 96 79.2
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 5.8e-39 164.1 97 77.3
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 5.8e-39 164.1 97 77.3
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 5.8e-39 164.1 97 77.3
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 5.8e-39 164.1 97 77.3
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 5.8e-39 164.1 97 77.3
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 7.5e-39 163.7 103 78.6
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.7e-38 162.5 96 78.1
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.7e-38 162.5 96 78.1
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.7e-38 162.5 96 79.2
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 3.7e-38 161.4 99 77.8
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.9e-37 159.1 102 74.5
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.2e-37 158.3 86 86.0
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.2e-37 158.3 86 86.0
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 5.4e-37 157.5 104 73.1
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.6e-36 156.0 84 81.0
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 3.5e-36 154.8 98 73.5
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.6e-36 154.5 98 75.5
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 4.6e-36 154.5 95 80.0
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 6.0e-36 154.1 95 75.8
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 6.0e-36 154.1 100 75.0
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 7.8e-36 153.7 98 72.4
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 7.8e-36 153.7 97 77.3
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.0e-35 153.3 102 73.5
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.0e-35 153.3 102 73.5
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.0e-35 153.3 84 78.6
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 1.3e-35 152.9 103 70.9
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.3e-35 152.9 103 72.8
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 3.0e-35 151.8 94 75.5
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 3.9e-35 151.4 94 77.7
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.9e-35 151.4 98 74.5
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 3.9e-35 151.4 95 74.7
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 5.1e-35 151.0 98 72.4
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 6.6e-35 150.6 80 81.2
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 6.6e-35 150.6 100 74.0
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 8.6e-35 150.2 102 70.6
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 8.6e-35 150.2 97 73.2
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 8.6e-35 150.2 97 73.2
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.6e-35 150.2 99 73.7
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.1e-34 149.8 97 73.2
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 1.1e-34 149.8 94 75.5
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.1e-34 149.8 98 73.5
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.1e-34 149.8 96 76.0
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.1e-34 149.8 74 87.8
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 1.5e-34 149.4 100 71.0
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.5e-34 149.4 102 72.5
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.5e-34 149.4 78 83.3
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.5e-34 149.4 96 76.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.9e-34 149.1 99 68.7
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.9e-34 149.1 101 70.3
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 2.5e-34 148.7 98 72.4
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 2.5e-34 148.7 97 73.2
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 3.3e-34 148.3 78 83.3
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.3e-34 148.3 95 74.7
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.3e-34 148.3 99 72.7
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 3.3e-34 148.3 99 70.7
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 5.6e-34 147.5 85 77.6
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 5.6e-34 147.5 88 77.3
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 9.5e-34 146.7 94 76.6
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 9.5e-34 146.7 98 72.4
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.2e-33 146.4 99 69.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.2e-33 146.4 74 85.1
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.2e-33 146.4 106 68.9
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.6e-33 146.0 83 78.3
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.6e-33 146.0 108 68.5
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.6e-33 146.0 108 68.5
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.1e-33 145.6 97 72.2
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 2.1e-33 145.6 97 72.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 2.1e-33 145.6 74 83.8
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 2.8e-33 145.2 87 74.7
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 3.6e-33 144.8 95 72.6
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.6e-33 144.8 96 69.8
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 3.6e-33 144.8 99 71.7
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 4.7e-33 144.4 98 73.5
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 4.7e-33 144.4 97 71.1
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 6.2e-33 144.1 80 77.5
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 6.2e-33 144.1 99 70.7
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 8.1e-33 143.7 78 78.2
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.1e-32 143.3 93 72.0
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.1e-32 143.3 99 70.7
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.1e-32 143.3 99 70.7
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.4e-32 142.9 97 73.2
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.4e-32 142.9 99 69.7
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 1.4e-32 142.9 99 68.7
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.4e-32 142.9 79 77.2
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.8e-32 142.5 98 69.4
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.8e-32 142.5 98 66.3
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.8e-32 142.5 79 77.2
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.3e-32 142.1 87 74.7
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.1e-32 141.7 87 72.4
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 3.1e-32 141.7 104 65.4
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.1e-32 141.7 97 73.2
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 4.0e-32 141.4 88 75.0
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 4.0e-32 141.4 108 68.5
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 5.2e-32 141.0 102 66.7
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.2e-31 139.8 98 67.3
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.2e-31 139.8 74 82.4
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.5e-31 139.4 103 66.0
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.5e-31 139.4 90 73.3
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 2.0e-31 139.0 78 78.2
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.6e-31 138.7 78 75.6
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 3.4e-31 138.3 90 72.2
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 2.2e-30 135.6 83 72.3
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 6.4e-30 134.0 78 73.1
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.2e-28 129.8 74 74.3
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.6e-28 129.4 78 71.8
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.3e-27 125.6 103 63.1
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.5e-26 122.1 81 74.1
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.4e-24 116.3 82 65.9
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 9.9e-23 110.2 62 87.1
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 1.4e-21 106.3 82 58.5
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 4.2e-21 104.8 70 67.1
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 3.5e-20 101.7 90 53.3
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 4.6e-20 101.3 72 70.8
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 4.6e-20 101.3 95 56.8
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 1.3e-17 93.2 98 51.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 5.3e-16 87.8 57 71.9
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 9.9e-15 83.6 73 50.7
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 3.2e-13 78.6 62 64.5
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 3.2e-13 78.6 62 58.1
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.2e-12 76.6 43 69.8
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.8e-08 62.8 48 58.3
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.2e-07 60.1 95 44.2
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 9.9e-07 57.0 47 61.7


User provided reference genes

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