Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 6.3e-85 317.4 159 100.0
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 6.3e-77 290.8 159 89.9
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 8.2e-77 290.4 159 90.6
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 8.2e-77 290.4 158 90.5
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 8.2e-77 290.4 158 90.5
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.4e-76 289.7 159 90.6
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.8e-76 289.3 159 90.6
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.5e-75 285.0 159 89.3
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 9.4e-73 276.9 155 87.1
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 6.1e-72 274.2 160 85.6
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 8.0e-72 273.9 160 86.2
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.8e-71 272.7 156 85.3
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 3.4e-70 268.5 154 83.8
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 7.5e-70 267.3 156 82.7
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 1.7e-69 266.2 154 83.8
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.7e-69 265.0 158 81.0
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.8e-69 264.6 155 83.9
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.8e-69 264.6 155 83.9
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.3e-69 264.2 155 83.2
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.1e-68 263.5 154 82.5
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 3.1e-68 261.9 155 81.9
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 3.1e-68 261.9 155 81.3
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 5.9e-67 257.7 156 77.6
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.0e-66 256.9 156 78.2
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.0e-66 256.9 155 80.6
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 2.9e-66 255.4 156 80.1
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 2.9e-66 255.4 160 80.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 3.8e-66 255.0 160 78.8
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 5.0e-66 254.6 154 81.2
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 6.5e-66 254.2 154 80.5
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.5e-66 254.2 159 76.7
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 8.5e-66 253.8 156 78.8
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.5e-65 252.3 156 76.3
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 2.5e-65 252.3 154 80.5
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.2e-65 251.9 154 79.9
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 4.2e-65 251.5 156 76.3
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 5.5e-65 251.1 154 79.9
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 9.4e-65 250.4 156 77.6
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 9.4e-65 250.4 159 76.1
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.2e-64 250.0 154 77.9
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.2e-64 250.0 160 76.2
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.6e-64 249.6 156 79.5
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.6e-64 249.6 156 76.9
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.6e-64 249.6 154 77.3
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.6e-64 249.6 155 76.8
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.6e-64 249.6 154 77.9
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.1e-64 249.2 156 75.6
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 2.1e-64 249.2 160 78.1
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-64 249.2 160 78.1
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-64 249.2 160 78.1
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-64 249.2 160 78.1
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-64 249.2 160 78.1
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-64 249.2 160 78.1
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 3.6e-64 248.4 154 77.3
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 3.6e-64 248.4 155 78.1
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 4.7e-64 248.1 154 77.9
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 8.0e-64 247.3 155 77.4
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.0e-63 246.9 140 86.4
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.0e-63 246.9 155 76.8
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.4e-63 246.5 155 74.8
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 155 76.8
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 3.0e-63 245.4 156 75.0
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 3.0e-63 245.4 154 77.9
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 76.0
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 4.4e-62 241.5 154 76.6
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 5.7e-62 241.1 156 74.4
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 7.5e-62 240.7 153 74.5
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 7.5e-62 240.7 156 73.7
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.3e-61 240.0 158 72.8
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.3e-61 240.0 157 75.2
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.7e-61 239.6 153 73.9
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.2e-61 239.2 154 75.3
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 2.8e-61 238.8 154 74.0
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 6.3e-61 237.7 153 75.2
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 6.3e-61 237.7 154 74.0
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.1e-60 236.9 153 75.2
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.1e-60 236.9 153 72.5
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.1e-60 236.9 160 71.9
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 1.8e-60 236.1 154 74.0
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.8e-60 236.1 160 71.9
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.8e-60 236.1 160 71.9
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 3.1e-60 235.3 155 69.7
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 3.1e-60 235.3 153 72.5
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 4.1e-60 235.0 160 71.9
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 9.1e-60 233.8 160 70.6
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.2e-59 233.4 154 71.4
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.6e-59 233.0 160 71.2
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.6e-59 233.0 155 72.9
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.6e-59 233.0 155 72.9
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.6e-59 233.0 154 72.1
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.6e-59 233.0 156 72.4
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.6e-59 233.0 156 72.4
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 3.5e-59 231.9 160 71.9
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.5e-59 231.5 154 71.4
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 4.5e-59 231.5 158 68.4
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.7e-58 229.6 154 72.7
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 2.3e-58 229.2 159 68.6
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 2.9e-58 228.8 160 69.4
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 2.9e-58 228.8 205 59.5
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 1.5e-57 226.5 156 69.2
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.5e-57 226.5 155 70.3
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.5e-57 226.5 155 70.3
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-57 226.5 155 70.3
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-57 226.5 155 70.3
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.5e-57 226.5 155 70.3
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.9e-57 226.1 158 66.5
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 4.2e-57 224.9 158 67.7
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 7.2e-57 224.2 156 68.6
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 7.2e-57 224.2 156 68.6
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 7.2e-57 224.2 156 68.6
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 9.5e-57 223.8 158 67.1
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 3.6e-56 221.9 124 84.7
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 3.6e-56 221.9 135 79.3
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 6.8e-55 217.6 122 86.1
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 2.6e-54 215.7 244 51.6
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 2.6e-54 215.7 138 75.4
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 8.3e-53 210.7 143 70.6
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.8e-52 209.5 146 67.1
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.8e-52 209.5 147 67.3
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 7.0e-52 207.6 161 65.2
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.5e-49 199.1 162 62.3
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 5.6e-49 198.0 211 48.8
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.2e-46 190.3 112 78.6
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 2.0e-46 189.5 298 41.9
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 4.4e-46 188.3 188 52.7
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 3.2e-44 182.2 109 78.9
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 2.3e-42 176.0 156 55.1
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.3e-41 172.2 140 62.9
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.1e-35 152.9 97 78.4
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.5e-33 146.7 109 70.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-31 139.0 133 54.1
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 9.9e-30 134.0 95 68.4
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.7e-29 132.1 154 45.5
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 3.5e-27 125.6 77 75.3
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 4.6e-27 125.2 149 44.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 7.8e-27 124.4 149 43.6
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 2.3e-26 122.9 150 42.7
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.3e-26 122.9 130 49.2
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.3e-25 117.9 96 63.5
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.3e-25 117.9 96 63.5
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 1.1e-23 114.0 145 50.3
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.8e-23 113.2 132 42.4
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 6.8e-23 111.3 65 80.0
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 8.9e-23 110.9 65 78.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-22 109.8 84 64.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.7e-21 106.7 64 78.1
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.4e-20 102.8 64 75.0
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 2.4e-20 102.8 144 39.6
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.2e-20 102.4 137 40.1
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.9e-17 93.2 78 60.3
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 6.2e-16 88.2 101 52.5
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-11 73.9 69 58.0
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 3.5e-11 72.4 69 56.5
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 3.4e-06 55.8 145 33.8
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 5.8e-06 55.1 124 33.1
Nn1g07333 Nelumbo nucifera HOM05D026918 ORTHO05D005698 7.6e-06 54.7 32 68.8


User provided reference genes

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