Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.8e-263 911.0 471 100.0
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 8.9e-228 793.5 467 87.8
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 3.3e-222 775.0 467 85.9
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 7.0e-217 757.3 467 83.9
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.3e-214 748.4 467 83.7
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-213 746.5 467 83.7
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.0e-207 725.3 467 81.4
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.1e-207 724.5 467 80.9
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-205 719.9 467 80.7
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 3.6e-205 718.4 406 93.1
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.8e-204 714.1 467 80.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.4e-156 557.0 470 65.3
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 4.1e-156 555.4 474 64.6
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.8e-151 540.0 475 61.7
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 7.4e-150 534.6 478 61.7
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.2e-147 527.3 469 62.3
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 4.5e-147 525.4 475 60.4
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 7.7e-147 524.6 460 62.0
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 7.7e-147 524.6 471 60.9
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 6.5e-146 521.5 474 58.9
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.1e-144 516.5 468 58.8
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.6e-144 515.8 475 59.6
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.9e-143 512.3 469 58.4
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 6.7e-143 511.5 472 60.0
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 8.8e-143 511.1 474 61.2
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 7.4e-142 508.1 474 60.5
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 8.2e-141 504.6 469 58.2
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.8e-140 503.4 475 59.2
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.8e-140 503.4 470 58.3
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.1e-140 502.3 470 58.9
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 4.1e-140 502.3 477 58.1
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 7.0e-140 501.5 473 59.4
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.6e-139 499.6 475 61.1
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.5e-139 498.8 489 58.5
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.0e-138 497.7 476 58.8
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.9e-138 496.1 476 59.5
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 8.5e-138 494.6 478 56.3
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 5.5e-137 491.9 470 58.9
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.6e-136 489.2 474 55.9
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 3.6e-136 489.2 469 56.9
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.8e-135 486.9 470 57.7
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 8.8e-135 484.6 470 58.1
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.6e-134 483.0 476 55.7
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 2.8e-133 479.6 471 56.9
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.7e-133 479.2 475 56.4
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.4e-132 477.2 472 56.8
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.1e-132 476.1 472 56.4
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.1e-132 476.1 472 56.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.6e-131 473.8 601 47.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.6e-131 473.8 473 56.9
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 3.8e-130 469.2 475 55.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.5e-129 467.2 484 57.2
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.2e-129 466.1 478 54.4
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 3.2e-129 466.1 475 57.7
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 9.4e-129 464.5 480 54.4
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.0e-127 461.1 483 53.0
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.8e-127 460.3 473 57.3
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 5.2e-127 458.8 476 57.4
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.2e-126 457.6 476 57.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.7e-123 446.4 476 56.9
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.9e-122 443.0 476 54.6
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.5e-121 440.7 504 50.4
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 8.9e-119 431.4 467 54.2
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 5.7e-118 428.7 488 51.2
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.1e-116 422.5 476 50.8
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.2e-115 421.0 477 51.4
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-115 420.6 474 53.8
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 7.8e-115 418.3 535 47.7
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.3e-114 416.8 469 50.1
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.9e-114 416.4 478 49.8
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.8e-114 416.0 472 48.9
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 6.6e-114 415.2 499 48.1
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 8.6e-114 414.8 437 54.7
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.1e-112 410.2 480 50.4
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.8e-112 409.8 490 51.8
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.1e-112 408.7 480 50.2
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 8.0e-112 408.3 473 50.3
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 2.3e-111 406.8 510 48.2
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.0e-111 406.0 482 49.0
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.4e-110 402.9 475 49.9
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.8e-110 402.1 479 49.3
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 9.8e-110 401.4 483 48.7
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 2.9e-109 399.8 472 48.1
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 2.9e-109 399.8 470 48.9
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 8.3e-109 398.3 533 44.5
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 8.3e-109 398.3 468 47.9
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.1e-108 397.9 480 50.2
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.4e-108 397.5 468 49.6
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.9e-108 397.1 483 49.9
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.4e-108 396.7 468 48.7
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 3.2e-108 396.4 468 47.9
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.1e-108 396.0 465 48.6
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 5.4e-108 395.6 346 59.5
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 9.2e-108 394.8 469 47.8
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.2e-107 394.4 475 48.4
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 7.8e-107 391.7 458 50.2
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.0e-106 391.3 476 48.3
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.3e-106 391.0 469 47.3
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.3e-106 390.2 479 48.9
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 5.0e-106 389.0 469 48.6
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 6.6e-106 388.7 485 47.0
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.9e-105 387.1 476 48.7
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 3.3e-105 386.3 456 50.0
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 5.6e-105 385.6 477 48.0
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 9.5e-105 384.8 480 48.8
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-104 384.4 466 48.3
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 6.2e-104 382.1 474 47.9
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.5e-102 377.5 475 48.6
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 3.4e-102 376.3 467 46.3
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.4e-102 375.9 480 46.7
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 9.8e-102 374.8 476 46.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.2e-101 373.6 375 58.1
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 2.9e-101 373.2 485 47.0
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.7e-101 372.9 478 47.1
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 8.3e-101 371.7 468 46.8
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.1e-100 371.3 460 48.7
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 7.0e-100 368.6 468 48.5
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-99 367.1 472 47.9
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.0e-99 365.5 469 47.1
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 8.1e-96 355.1 476 47.1
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 5.2e-95 352.4 279 62.0
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 5.2e-95 352.4 413 47.2
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.0e-94 350.5 437 48.3
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.7e-93 346.3 490 44.7
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.4e-92 343.6 373 55.2
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 7.8e-91 338.6 306 57.5
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.0e-87 326.2 460 43.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.0e-86 323.9 466 44.0
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 3.4e-86 323.2 372 48.9
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 9.2e-84 315.1 457 46.6
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.6e-83 314.3 422 44.8
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.1e-83 313.9 368 46.5
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 8.7e-82 308.5 435 44.1
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.1e-81 308.1 370 47.6
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.5e-78 297.7 469 41.8
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.4e-78 296.2 304 52.6
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.3e-77 294.7 364 47.0
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 5.4e-76 289.3 385 47.8
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.7e-75 287.0 367 46.6
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.5e-73 281.2 354 47.5
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.8e-72 276.9 359 45.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 9.0e-71 271.9 208 64.4
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-69 268.1 339 44.8
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 2.2e-69 267.3 262 52.7
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.9e-69 266.9 316 47.2
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 6.0e-67 259.2 447 36.9
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.3e-66 258.1 395 43.0
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.8e-66 257.7 378 45.0
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.3e-65 253.1 304 44.7
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.1e-59 234.2 465 34.8
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 3.5e-59 233.4 141 78.0
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.8e-58 231.1 468 35.3
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.7e-57 226.1 297 41.4
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 6.2e-56 222.6 345 40.3
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.8e-55 221.1 399 36.6
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 5.8e-54 216.1 357 37.8
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 3.0e-50 203.8 204 55.9
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 4.8e-48 196.4 196 53.1
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.8e-47 194.5 257 45.1
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.9e-47 192.6 386 33.9
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.5e-46 191.4 277 39.7
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.5e-46 191.4 318 37.1
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.6e-46 190.7 329 37.7
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.9e-39 166.0 99 79.8
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 3.4e-38 163.7 140 60.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 7.4e-33 146.0 169 47.9
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 3.7e-32 143.7 207 44.4
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.3e-26 124.4 101 58.4
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.0e-26 124.0 196 38.3
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.7e-25 119.8 76 72.4
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.4e-23 115.2 82 64.6
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.4e-23 114.4 204 37.3
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 5.0e-21 106.7 193 36.8
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 8.5e-21 105.9 86 59.3
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.5e-20 105.1 89 57.3
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.2e-19 102.1 150 42.7
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 5.7e-17 93.2 63 71.4
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 8.8e-10 69.3 52 59.6
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 5.9e-06 56.6 34 73.5


User provided reference genes

Program Settings