Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 3.9e-202 708.0 372 100.0
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 3.8e-157 558.5 375 79.5
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 9.1e-143 510.8 375 74.1
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.2e-139 500.4 361 74.5
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.2e-139 500.4 361 74.5
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 3.7e-128 462.2 385 69.1
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 6.5e-125 451.4 334 73.4
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.6e-123 446.8 313 75.7
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 4.7e-123 445.3 328 71.6
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 4.0e-122 442.2 288 79.9
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 8.8e-122 441.0 284 79.9
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 3.5e-118 429.1 373 65.1
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 6.5e-117 424.9 380 62.4
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 8.5e-117 424.5 369 64.2
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.8e-114 416.8 299 74.2
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 4.0e-114 415.6 353 64.6
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 3.7e-112 409.1 327 67.3
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 1.8e-111 406.8 366 62.0
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 3.1e-111 406.0 365 61.9
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 2.0e-110 403.3 310 71.0
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 2.7e-110 402.9 345 64.3
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 4.5e-110 402.1 356 63.2
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 7.8e-110 401.4 285 72.3
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 7.8e-110 401.4 327 65.4
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.3e-109 400.6 314 67.8
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.7e-109 400.2 336 65.5
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 5.0e-109 398.7 337 64.4
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 5.0e-109 398.7 284 70.4
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 6.6e-109 398.3 352 61.9
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 4.3e-108 395.6 385 61.0
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 1.2e-107 394.0 356 62.9
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.8e-107 392.9 353 61.5
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 8.0e-107 391.3 294 70.4
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.4e-106 390.6 312 68.6
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.8e-106 390.2 291 70.4
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 5.2e-106 388.7 330 64.2
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 5.2e-106 388.7 329 64.4
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 6.8e-106 388.3 290 70.3
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 6.8e-106 388.3 287 70.7
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.5e-105 387.1 329 66.6
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.5e-105 387.1 329 66.6
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.0e-105 386.7 378 57.4
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.0e-105 386.7 287 69.0
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 2.6e-105 386.3 298 69.1
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 3.4e-105 386.0 378 57.7
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 3.4e-105 386.0 382 57.6
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 3.4e-105 386.0 283 73.1
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 5.7e-105 385.2 319 63.9
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.7e-105 385.2 314 65.3
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 9.8e-105 384.4 345 61.2
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 9.8e-105 384.4 345 61.2
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 2.9e-104 382.9 283 68.6
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 4.9e-104 382.1 350 62.0
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 6.4e-104 381.7 319 65.8
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 6.4e-104 381.7 357 61.9
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 8.3e-104 381.3 346 63.6
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.1e-103 380.9 322 66.1
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 1.4e-103 380.6 357 61.6
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.8e-103 380.2 375 57.6
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 3.2e-103 379.4 306 66.0
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 3.2e-103 379.4 311 64.3
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 4.1e-103 379.0 302 66.6
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 5.4e-103 378.6 286 67.8
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 5.4e-103 378.6 303 66.3
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 7.0e-103 378.3 284 69.4
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 9.2e-103 377.9 256 75.8
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.2e-102 377.5 311 64.6
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 1.6e-102 377.1 343 60.3
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 2.0e-102 376.7 253 75.1
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 4.6e-102 375.6 252 76.2
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.3e-101 374.0 307 66.1
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 2.3e-101 373.2 332 60.5
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 2.3e-101 373.2 332 60.5
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 5.0e-101 372.1 253 75.5
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.6e-101 371.3 325 61.5
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.1e-100 370.9 258 71.3
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.5e-100 370.5 334 61.1
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 2.5e-100 369.8 343 60.3
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 3.3e-100 369.4 252 73.8
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 7.3e-100 368.2 267 71.2
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 7.3e-100 368.2 253 73.5
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 9.5e-100 367.9 287 67.9
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.2e-99 367.5 368 55.4
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 2.1e-99 366.7 262 70.6
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 2.8e-99 366.3 285 68.4
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.6e-99 365.9 251 72.5
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 1.0e-98 364.4 262 70.2
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 1.8e-98 363.6 252 73.0
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 6.8e-98 361.7 264 68.9
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 5.8e-97 358.6 388 53.6
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 7.5e-97 358.2 335 59.4
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.7e-96 357.1 277 68.6
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 2.9e-96 356.3 235 75.3
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 2.9e-96 356.3 309 62.1
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 4.9e-96 355.5 287 65.9
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 2.4e-95 353.2 308 61.0
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.4e-95 353.2 310 60.6
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 2.4e-95 353.2 251 68.9
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 5.4e-95 352.1 280 65.0
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 7.0e-95 351.7 269 65.8
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 7.0e-95 351.7 273 65.2
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.3e-93 347.4 261 68.6
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 3.0e-93 346.3 385 53.2
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 2.5e-92 343.2 201 83.6
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.3e-92 342.4 294 62.9
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 9.5e-92 341.3 235 72.8
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.1e-90 337.8 220 75.0
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 6.4e-88 328.6 253 66.8
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 4.3e-84 315.8 256 64.5
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 8.1e-83 311.6 178 87.1
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.1e-82 311.2 241 68.9
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 5.2e-82 308.9 179 86.0
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 3.4e-81 306.2 307 55.7
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 5.8e-81 305.4 248 62.1
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.3e-80 304.3 234 65.0
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.2e-79 299.7 181 82.9
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 9.6e-76 288.1 320 54.7
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 3.6e-75 286.2 182 81.3
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 7.6e-73 278.5 213 64.8
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.3e-72 277.7 261 56.3
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.8e-72 276.2 262 55.7
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.6e-70 270.8 261 57.1
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 6.0e-70 268.9 164 83.5
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 7.8e-70 268.5 283 56.5
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 6.4e-64 248.8 155 78.1
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.2e-62 244.6 284 52.8
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 4.3e-60 236.1 195 67.2
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 3.7e-59 233.0 154 75.3
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 6.0e-54 215.7 130 83.8
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 7.9e-54 215.3 130 84.6
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 1.0e-53 214.9 130 83.8
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-53 214.9 130 83.8
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 2.3e-53 213.8 377 41.6
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 5.1e-53 212.6 130 83.8
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 5.1e-53 212.6 130 83.8
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.3e-48 198.0 226 44.7
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.8e-48 196.4 226 44.2
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 1.4e-47 194.5 287 43.6
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.6e-46 191.0 112 82.1
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 7.9e-46 188.7 112 81.2
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 8.7e-45 185.3 112 80.4
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 8.7e-45 185.3 367 39.2
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-41 174.9 102 82.4
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.2e-41 174.9 102 82.4
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 2.9e-40 170.2 102 88.2
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 2.9e-40 170.2 102 88.2
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 4.2e-39 166.4 102 86.3
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 8.7e-37 158.7 265 36.2
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.5e-36 157.9 255 39.6
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 7.4e-36 155.6 158 57.6
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 4.8e-35 152.9 91 82.4
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 3.8e-32 143.3 110 66.4
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.2e-31 139.8 143 57.3
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 8.2e-27 125.6 168 47.0
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 9.1e-26 122.1 106 61.3
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.0e-25 120.9 169 49.1
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 3.4e-25 120.2 113 56.6
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.9e-24 117.1 99 61.6
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 1.1e-23 115.2 80 75.0
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 2.7e-22 110.5 63 85.7
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 6.7e-21 105.9 63 77.8
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 4.4e-20 103.2 169 39.6
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 5.7e-20 102.8 87 59.8
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 3.7e-19 100.1 77 62.3
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 3.1e-18 97.1 214 29.9
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 1.0e-13 82.0 44 90.9
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 2.0e-12 77.8 52 73.1
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 2.6e-12 77.4 71 59.2


User provided reference genes

Program Settings