Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 5.4e-49 197.2 91 100.0
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.7e-42 175.6 91 89.0
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 6.4e-42 173.7 88 90.9
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.9e-38 162.2 91 82.4
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.3e-37 159.5 84 83.3
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.6e-37 159.1 89 79.8
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.1e-37 158.7 83 85.5
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.1e-37 158.7 83 85.5
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.8e-37 158.3 86 82.6
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.8e-37 158.3 86 82.6
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 2.8e-37 158.3 91 80.2
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 3.7e-37 157.9 83 84.3
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 4.8e-37 157.5 91 79.1
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 4.8e-37 157.5 91 80.2
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 6.2e-37 157.1 78 87.2
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 6.2e-37 157.1 89 79.8
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 6.2e-37 157.1 89 80.9
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 6.2e-37 157.1 93 78.5
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 6.2e-37 157.1 88 78.4
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 8.1e-37 156.8 91 78.0
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 8.1e-37 156.8 93 77.4
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.1e-36 156.4 91 78.0
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.1e-36 156.4 89 80.9
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.4e-36 156.0 89 80.9
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.4e-36 156.0 93 77.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 2.4e-36 155.2 81 85.2
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.1e-36 154.8 86 77.9
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 5.3e-36 154.1 83 81.9
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 6.9e-36 153.7 83 83.1
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 9.0e-36 153.3 89 76.4
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 9.0e-36 153.3 88 77.3
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 9.0e-36 153.3 80 83.8
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.2e-35 152.9 88 78.4
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.5e-35 152.5 92 76.1
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.5e-35 152.5 89 76.4
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.0e-35 152.1 77 84.4
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 2.0e-35 152.1 89 80.9
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 85 77.6
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 85 77.6
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.6e-35 151.8 91 78.0
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 2.6e-35 151.8 89 77.5
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 3.4e-35 151.4 83 78.3
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 5.8e-35 150.6 83 79.5
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 5.8e-35 150.6 83 83.1
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 5.8e-35 150.6 89 78.7
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 7.6e-35 150.2 88 78.4
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 7.6e-35 150.2 85 76.5
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 7.6e-35 150.2 93 74.2
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 9.9e-35 149.8 78 80.8
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 9.9e-35 149.8 81 81.5
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 9.9e-35 149.8 87 79.3
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.7e-34 149.1 86 79.1
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.7e-34 149.1 94 74.5
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 2.2e-34 148.7 77 81.8
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.2e-34 148.7 91 74.7
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 2.9e-34 148.3 83 75.9
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 3.8e-34 147.9 79 79.7
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 3.8e-34 147.9 80 80.0
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 3.8e-34 147.9 79 81.0
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 3.8e-34 147.9 89 76.4
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 4.9e-34 147.5 81 79.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 6.4e-34 147.1 86 79.1
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 8.4e-34 146.7 89 76.4
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.4e-34 146.7 86 76.7
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.1e-33 146.4 89 76.4
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.1e-33 146.4 83 77.1
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 4.2e-33 144.4 89 71.9
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 7.1e-33 143.7 82 76.8
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 9.3e-33 143.3 89 75.3
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 9.3e-33 143.3 85 70.6
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 9.3e-33 143.3 89 70.8
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 1.2e-32 142.9 80 78.8
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 1.6e-32 142.5 80 78.8
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 2.1e-32 142.1 95 72.6
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 2.1e-32 142.1 85 76.5
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 8.7e-31 136.7 95 69.5
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 1.1e-30 136.3 135 54.1
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 5.6e-30 134.0 76 75.0
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 2.6e-27 125.2 142 49.3
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 6.9e-20 100.5 84 60.7
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 4.5e-19 97.8 76 57.9
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 1.4e-17 92.8 41 95.1
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 4.2e-17 91.3 198 33.3
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 1.2e-16 89.7 42 90.5
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.2e-16 89.7 43 88.4
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 1.4e-15 86.3 42 83.3
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 6.7e-15 84.0 41 85.4
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 2.2e-13 79.0 50 72.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 2.2e-13 79.0 43 79.1
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 8.2e-13 77.0 50 68.0
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.3e-10 69.7 50 66.0
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 1.7e-10 69.3 32 93.8
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 5.0e-10 67.8 40 70.0
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 5.0e-10 67.8 44 63.6
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 2.7e-08 62.0 79 40.5
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 4.7e-08 61.2 83 37.3
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 4.7e-08 61.2 84 38.1
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 4.7e-08 61.2 79 39.2
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 4.7e-08 61.2 83 38.6
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 6.1e-08 60.8 79 38.0
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 6.1e-08 60.8 79 39.2
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 6.1e-08 60.8 79 39.2
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 7.9e-08 60.5 103 34.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 7.9e-08 60.5 81 37.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 7.9e-08 60.5 86 37.2
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 7.9e-08 60.5 86 37.2
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 7.9e-08 60.5 79 38.0
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.0e-07 60.1 82 37.8
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.0e-07 60.1 84 38.1
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.4e-07 59.7 83 36.1
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.4e-07 59.7 84 38.1
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.4e-07 59.7 83 38.6
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.8e-07 59.3 83 36.1
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.8e-07 59.3 81 37.0
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.8e-07 59.3 82 36.6
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.8e-07 59.3 82 37.8
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.8e-07 59.3 86 37.2
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.3e-07 58.9 79 36.7
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.3e-07 58.9 79 36.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 2.3e-07 58.9 79 38.0
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.3e-07 58.9 86 37.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 2.3e-07 58.9 86 37.2
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 2.3e-07 58.9 83 36.1
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 2.3e-07 58.9 79 38.0
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 3.0e-07 58.5 82 36.6
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 3.0e-07 58.5 81 37.0
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.9e-07 58.2 79 36.7
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 3.9e-07 58.2 81 37.0
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 5.1e-07 57.8 85 36.5
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 5.1e-07 57.8 86 34.9
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 6.7e-07 57.4 82 35.4
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 6.7e-07 57.4 77 36.4
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 6.7e-07 57.4 81 35.8
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 6.7e-07 57.4 79 38.0
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 8.8e-07 57.0 81 37.0
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 8.8e-07 57.0 77 33.8
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 8.8e-07 57.0 81 35.8
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 8.8e-07 57.0 83 36.1
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.1e-06 56.6 87 34.5
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.1e-06 56.6 79 34.2
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.1e-06 56.6 79 36.7
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.1e-06 56.6 83 34.9
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 1.1e-06 56.6 86 36.0
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.5e-06 56.2 98 33.7
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 36.7
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 36.7
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 36.7
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.5e-06 56.2 81 35.8
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 36.7
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.5e-06 56.2 83 34.9
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 2.0e-06 55.8 83 36.1
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 2.6e-06 55.5 82 34.1
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 2.6e-06 55.5 87 35.6
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 2.6e-06 55.5 86 36.0
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 3.3e-06 55.1 77 33.8
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 3.3e-06 55.1 91 34.1
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 3.3e-06 55.1 91 34.1
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 4.4e-06 54.7 83 33.7
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 5.7e-06 54.3 79 35.4
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 7.4e-06 53.9 83 33.7
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 7.4e-06 53.9 93 35.5


User provided reference genes

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