Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.1e-243 846.3 437 100.0
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.4e-205 718.4 406 93.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 9.9e-181 637.1 402 83.8
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.3e-177 625.9 402 82.1
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 7.8e-170 600.9 401 77.8
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 6.6e-169 597.8 402 79.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.1e-168 597.0 401 78.3
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.9e-168 596.3 401 78.6
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.5e-168 595.9 402 79.1
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.3e-168 594.3 395 79.0
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.7e-161 573.2 402 76.4
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 3.1e-126 456.1 394 61.7
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.0e-125 453.4 396 62.4
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 9.4e-123 444.5 394 58.9
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 6.7e-121 438.3 398 60.8
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.1e-120 437.6 393 57.0
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.5e-120 437.2 394 58.4
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.3e-120 436.0 406 58.4
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 9.1e-118 427.9 392 58.2
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 3.5e-117 426.0 365 58.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 4.5e-117 425.6 377 60.2
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 5.9e-117 425.2 377 59.4
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.7e-117 424.9 412 56.6
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.2e-116 423.3 416 55.3
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.2e-116 423.3 419 56.1
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.1e-115 421.0 396 58.6
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 2.5e-115 419.9 375 59.7
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 5.5e-115 418.7 398 58.0
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.1e-114 416.8 393 55.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 4.7e-114 415.6 416 55.5
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 4.7e-114 415.6 393 55.7
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 8.0e-114 414.8 371 56.6
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.0e-113 414.5 399 55.4
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.9e-113 412.5 396 54.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 3.9e-113 412.5 383 58.5
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 5.2e-113 412.1 371 59.0
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-111 407.5 420 53.8
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 2.2e-111 406.8 379 56.7
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.8e-111 406.4 418 53.1
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 4.8e-111 405.6 413 55.2
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 8.2e-111 404.8 407 56.0
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 9.1e-110 401.4 395 56.5
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.2e-109 401.0 400 53.2
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.6e-109 400.6 396 55.3
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.5e-109 399.4 376 56.9
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 7.7e-109 398.3 398 54.5
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.8e-108 396.0 404 54.7
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.7e-106 389.0 415 52.3
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.7e-106 389.0 415 52.3
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 8.0e-106 388.3 402 51.7
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.0e-105 387.9 412 53.6
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 2.3e-105 386.7 542 43.2
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 4.0e-105 386.0 399 53.4
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 8.8e-105 384.8 403 52.4
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 2.6e-104 383.3 417 52.8
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.5e-104 381.7 409 54.5
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 9.7e-104 381.3 405 52.1
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.3e-103 380.9 383 54.0
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 8.3e-103 378.3 409 54.3
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-101 374.0 406 53.7
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.9e-100 369.8 409 54.3
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.5e-99 367.5 416 49.3
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 7.2e-99 365.2 427 48.5
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.7e-98 363.2 428 47.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 4.7e-98 362.5 417 49.4
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 8.0e-98 361.7 345 55.9
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.0e-97 361.3 396 51.8
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.2e-97 359.0 417 48.9
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.2e-96 357.8 464 46.8
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.6e-96 356.7 379 50.7
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 4.4e-96 355.9 403 49.9
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-94 351.3 421 50.4
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.4e-94 350.1 407 46.9
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 9.1e-94 348.2 414 45.9
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.6e-93 347.4 378 50.5
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 3.5e-93 346.3 414 45.9
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 5.9e-93 345.5 377 50.1
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 5.9e-93 345.5 406 48.3
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 7.7e-93 345.1 415 46.0
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 7.7e-93 345.1 415 46.0
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.0e-92 344.7 413 47.7
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.0e-92 344.7 382 51.3
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.0e-92 342.4 413 46.5
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-91 340.9 382 51.6
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.9e-91 340.5 443 45.4
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.5e-91 340.1 414 47.1
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 2.5e-91 340.1 383 50.4
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.5e-91 340.1 406 47.8
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 4.2e-91 339.3 427 47.1
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 4.2e-91 339.3 407 49.6
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 9.5e-91 338.2 379 49.3
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 9.5e-91 338.2 414 46.9
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 9.5e-91 338.2 385 49.1
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.2e-90 337.8 406 47.5
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.6e-90 337.4 388 48.2
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.6e-90 337.4 386 48.7
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.1e-90 337.0 406 47.8
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.1e-90 337.0 383 50.1
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.7e-90 335.9 384 49.0
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 8.0e-90 335.1 373 49.9
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.8e-89 334.0 384 49.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 6.8e-89 332.0 372 48.7
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.5e-88 330.9 379 46.2
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.5e-88 328.6 406 44.6
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.7e-87 327.4 369 49.3
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 8.3e-87 325.1 406 46.3
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 7.0e-86 322.0 408 45.8
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 7.0e-86 322.0 385 48.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.2e-86 321.6 352 52.6
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-85 321.2 395 45.1
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.1e-83 314.7 397 45.6
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.5e-83 313.5 390 47.2
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.3e-83 313.2 403 43.7
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.3e-83 312.8 413 44.3
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 9.5e-83 311.6 384 45.3
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 2.8e-82 310.1 404 44.1
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.6e-82 309.7 400 46.0
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 6.1e-82 308.9 414 44.2
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.0e-81 308.1 403 45.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.3e-81 307.0 278 55.4
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 4.0e-81 306.2 381 47.2
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 5.8e-80 302.4 390 45.6
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 3.7e-79 299.7 306 52.3
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.5e-77 293.1 349 47.6
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.9e-75 287.3 371 45.0
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.3e-75 286.2 360 44.7
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.6e-74 283.1 372 45.2
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.2e-74 282.3 281 55.9
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.1e-73 280.0 389 47.6
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 5.2e-73 279.3 369 44.7
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 8.9e-73 278.5 368 43.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.1e-70 271.6 362 43.1
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.2e-69 268.1 303 48.5
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.1e-67 261.5 366 43.4
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.5e-67 261.2 331 44.7
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.5e-67 261.2 419 40.6
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.9e-67 260.8 393 43.3
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 5.6e-67 259.2 362 44.8
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.6e-66 257.7 280 52.9
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.6e-64 250.4 358 42.5
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-59 234.2 339 42.2
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.3e-59 233.4 316 44.3
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.2e-58 231.5 330 43.0
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-57 228.4 261 47.5
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 4.0e-57 226.5 208 56.7
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.8e-56 222.6 304 40.8
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.7e-55 221.1 372 36.8
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.7e-55 221.1 279 48.0
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.3e-50 204.9 282 43.6
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.3e-50 204.9 371 36.4
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.8e-49 201.1 293 38.2
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 3.1e-49 200.3 141 68.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 9.0e-49 198.7 291 39.9
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 9.9e-48 195.3 411 34.8
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 4.9e-47 193.0 271 41.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.8e-42 177.2 265 38.5
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.8e-41 174.5 198 51.5
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 4.5e-40 169.9 194 47.9
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.2e-39 167.5 317 34.4
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.4e-39 166.0 99 79.8
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-38 165.2 256 40.6
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 4.2e-38 163.3 276 37.0
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 5.5e-38 162.9 327 34.3
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.7e-37 160.6 388 31.7
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-29 134.8 140 52.1
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 6.3e-26 122.9 99 58.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.4e-25 121.7 206 39.3
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.3e-25 119.8 76 72.4
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 6.9e-25 119.4 167 43.7
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.3e-23 115.2 82 64.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 7.9e-21 105.9 86 59.3
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 8.7e-20 102.4 150 42.7
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 6.3e-18 96.3 196 33.7
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 5.3e-17 93.2 63 71.4
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.3e-17 93.2 202 32.2
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 5.1e-12 76.6 192 31.8
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 8.2e-10 69.3 52 59.6
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.6e-08 64.3 71 43.7


User provided reference genes

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