Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 3.2e-78 295.0 150 100.0
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 1.4e-54 216.5 135 81.5
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.9e-54 216.1 135 83.0
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 9.2e-54 213.8 135 80.0
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.3e-52 209.9 135 78.5
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 2.3e-52 209.1 135 80.7
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 6.6e-52 207.6 135 79.3
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 1.7e-47 193.0 135 71.9
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.7e-47 193.0 134 72.4
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 2.2e-47 192.6 134 72.4
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 4.9e-47 191.4 135 68.9
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 8.4e-47 190.7 145 66.2
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 3.2e-46 188.7 134 70.9
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 2.1e-45 186.0 135 69.6
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 2.1e-45 186.0 135 66.7
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 2.7e-45 185.7 135 68.1
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 3.5e-45 185.3 132 68.2
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 7.8e-45 184.1 136 66.9
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.7e-44 183.0 140 67.1
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 1.7e-44 183.0 135 66.7
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 2.3e-44 182.6 135 66.7
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 2.3e-44 182.6 135 68.1
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 5.1e-44 181.4 136 66.2
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 6.6e-44 181.0 135 67.4
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 8.7e-44 180.6 135 67.4
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.1e-43 180.3 134 70.9
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 1.1e-43 180.3 135 67.4
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 1.5e-43 179.9 138 62.3
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.5e-43 179.9 135 65.2
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 3.3e-43 178.7 134 70.1
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 3.3e-43 178.7 134 70.1
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 5.6e-43 177.9 135 67.4
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 7.3e-43 177.6 135 68.1
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 7.3e-43 177.6 136 66.9
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 9.6e-43 177.2 135 68.1
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 9.6e-43 177.2 135 65.9
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.3e-42 176.8 135 68.1
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 1.6e-42 176.4 137 66.4
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 2.1e-42 176.0 135 66.7
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 4.8e-42 174.9 135 67.4
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 8.1e-42 174.1 135 64.4
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 8.1e-42 174.1 135 65.2
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 1.4e-41 173.3 135 64.4
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 1.4e-41 173.3 137 65.0
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 1.4e-41 173.3 135 68.9
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.8e-41 172.9 136 66.2
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.8e-41 172.9 136 66.2
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 3.1e-41 172.2 145 62.8
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 4.0e-41 171.8 135 65.2
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 1.2e-40 170.2 136 63.2
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.0e-40 169.5 136 65.4
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.0e-40 169.5 135 65.2
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 2.6e-40 169.1 135 64.4
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 2.6e-40 169.1 135 64.4
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 2.6e-40 169.1 135 64.4
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 2.6e-40 169.1 135 63.7
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 3.4e-40 168.7 135 63.7
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 3.4e-40 168.7 142 64.8
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 4.5e-40 168.3 135 63.0
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 5.8e-40 167.9 137 62.8
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 5.8e-40 167.9 135 60.7
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 5.8e-40 167.9 135 62.2
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 7.6e-40 167.5 136 59.6
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 7.6e-40 167.5 136 62.5
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 9.9e-40 167.2 135 66.7
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 9.9e-40 167.2 135 60.7
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 1.3e-39 166.8 135 65.2
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 2.9e-39 165.6 135 62.2
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 3.8e-39 165.2 135 64.4
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 4.9e-39 164.9 135 62.2
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 6.4e-39 164.5 136 64.0
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 6.4e-39 164.5 142 64.1
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 8.4e-39 164.1 135 62.2
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 1.1e-38 163.7 135 62.2
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 1.1e-38 163.7 135 63.7
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 1.1e-38 163.7 135 60.7
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 1.4e-38 163.3 138 63.8
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.9e-38 162.9 136 61.8
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.9e-38 162.9 136 62.5
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 2.4e-38 162.5 100 82.0
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 3.2e-38 162.2 135 60.0
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 7.1e-38 161.0 135 61.5
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 1.2e-37 160.2 136 55.9
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 2.1e-37 159.5 136 62.5
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 2.1e-37 159.5 136 62.5
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 3.5e-37 158.7 134 61.2
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 1.0e-36 157.1 142 60.6
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 3.9e-36 155.2 132 58.3
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 3.9e-36 155.2 135 54.1
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 8.7e-36 154.1 108 68.5
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 1.1e-35 153.7 113 70.8
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.1e-35 153.7 135 59.3
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 1.5e-35 153.3 135 53.3
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 3.3e-35 152.1 135 57.0
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 3.3e-35 152.1 136 54.4
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 3.3e-35 152.1 167 49.1
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 2.1e-34 149.4 130 57.7
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.5e-32 143.3 138 52.2
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.5e-32 143.3 138 52.2
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 4.5e-32 141.7 146 52.7
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.7e-31 139.8 108 63.9
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 8.4e-31 137.5 110 64.5
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 1.1e-30 137.1 108 62.0
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 7.1e-30 134.4 146 49.3
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 6.0e-29 131.3 132 53.0
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 3.0e-28 129.0 129 58.9
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 3.0e-28 129.0 105 61.9
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 3.9e-28 128.6 141 53.2
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 1.1e-25 120.6 153 49.0
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 1.5e-24 116.7 109 57.8
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 5.5e-22 108.2 137 44.5
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 7.1e-22 107.8 137 46.7
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.3e-18 97.1 103 53.4
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 2.8e-18 95.9 138 42.8
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.9e-14 83.2 131 38.9
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 4.3e-11 72.0 110 44.5
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 8.2e-10 67.8 52 63.5
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 1.8e-09 66.6 145 32.4
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 1.5e-08 63.5 89 50.6
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 1.5e-08 63.5 89 50.6
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 2.2e-07 59.7 42 61.9
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 1.9e-06 56.6 38 63.2


User provided reference genes

Program Settings