Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 5.4e-179 630.9 331 100.0
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 2.7e-138 495.7 326 81.6
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.6e-133 479.2 326 79.4
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.6e-125 451.1 326 75.5
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.1e-123 444.5 326 74.2
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.6e-122 441.8 326 73.6
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 5.1e-121 438.3 326 74.2
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.6e-121 438.0 326 74.2
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.1e-118 429.1 326 72.1
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 1.3e-111 407.1 325 71.1
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.2e-76 290.0 326 53.1
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.5e-75 286.6 321 48.3
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 2.5e-75 286.6 336 49.1
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 3.2e-75 286.2 302 54.3
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 4.0e-73 279.3 295 53.9
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.3e-72 276.2 303 52.5
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 7.5e-72 275.0 316 50.0
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 9.7e-72 274.6 331 46.5
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 1.3e-71 274.2 329 48.9
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.3e-71 274.2 309 50.5
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.7e-71 273.9 319 49.8
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.7e-71 272.7 307 53.1
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.8e-70 270.4 327 45.3
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 6.5e-68 261.9 322 46.9
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 2.5e-67 260.0 299 52.5
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 3.2e-67 259.6 340 45.3
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 5.5e-67 258.8 324 45.7
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.6e-66 257.3 320 46.9
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 4.0e-65 252.7 323 44.9
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.2e-64 251.1 337 44.8
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.0e-64 250.4 280 48.9
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.2e-63 246.9 330 44.2
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.2e-63 246.9 309 45.0
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.4e-62 244.2 330 44.5
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 7.0e-62 241.9 339 42.5
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 7.0e-62 241.9 319 46.1
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 2.9e-60 236.5 308 43.8
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 4.2e-59 232.6 314 44.3
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 9.5e-59 231.5 308 43.5
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.6e-58 229.6 328 42.7
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.4e-57 227.6 309 43.0
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 6.8e-57 225.3 331 41.7
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 6.8e-57 225.3 328 42.4
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 8.8e-57 224.9 311 42.1
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.5e-56 224.2 280 47.9
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 2.6e-56 223.4 320 41.2
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.6e-56 223.4 321 42.1
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 9.8e-56 221.5 314 42.7
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 1.3e-55 221.1 314 42.4
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.2e-55 220.3 328 41.2
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.2e-55 220.3 328 40.9
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.8e-55 219.9 300 42.0
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 3.7e-55 219.5 296 45.9
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 3.7e-55 219.5 321 41.1
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 4.9e-55 219.2 326 42.6
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 8.3e-55 218.4 309 42.1
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.1e-54 218.0 302 42.7
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 1.8e-54 217.2 314 42.0
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.8e-54 217.2 292 43.8
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.6e-53 214.2 321 42.4
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 2.7e-53 213.4 330 39.7
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 3.5e-53 213.0 301 40.2
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 3.5e-53 213.0 336 40.2
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 5.9e-53 212.2 322 41.3
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 2.9e-52 209.9 324 40.1
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 2.9e-52 209.9 328 42.1
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 6.6e-52 208.8 318 42.1
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 1.1e-51 208.0 280 43.6
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.9e-51 207.2 322 41.0
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 2.5e-51 206.8 309 41.4
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 4.3e-51 206.1 315 42.2
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 1.6e-50 204.1 329 40.1
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 4.7e-50 202.6 309 41.1
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 1.8e-49 200.7 305 39.7
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 4.0e-49 199.5 314 39.2
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 4.0e-49 199.5 308 39.6
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 6.8e-49 198.7 218 52.3
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 6.8e-49 198.7 314 39.2
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 6.8e-49 198.7 327 41.0
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 8.9e-49 198.4 315 39.4
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 1.2e-48 198.0 339 38.6
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.5e-48 197.6 295 39.3
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 2.0e-48 197.2 339 38.6
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.7e-47 194.1 314 36.9
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 4.9e-47 192.6 304 39.1
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 6.4e-47 192.2 314 38.5
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 8.3e-47 191.8 314 38.5
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 8.3e-47 191.8 270 41.1
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 1.4e-46 191.0 250 42.8
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 3.2e-46 189.9 314 38.5
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 7.0e-46 188.7 312 39.1
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 2.7e-45 186.8 307 40.1
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 7.8e-45 185.3 294 40.1
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.1e-43 181.4 304 36.8
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 4.3e-43 179.5 317 36.3
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 3.6e-42 176.4 324 36.7
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 4.7e-42 176.0 313 36.7
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 6.2e-42 175.6 330 37.9
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 3.1e-41 173.3 269 39.4
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-40 171.0 229 41.9
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 5.8e-40 169.1 325 36.0
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 7.5e-40 168.7 274 37.6
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.3e-39 167.9 309 38.5
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 4.1e-38 162.9 328 35.1
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 6.0e-37 159.1 307 34.2
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.7e-36 157.5 291 35.4
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 3.9e-36 156.4 290 35.5
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 8.6e-36 155.2 279 35.8
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 2.8e-34 150.2 219 40.6
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 6.2e-34 149.1 303 34.3
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.4e-33 147.9 256 36.3
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 5.2e-33 146.0 308 32.5
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 8.3e-31 138.7 306 32.7
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 7.1e-30 135.6 303 32.0
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 7.8e-29 132.1 319 32.6
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.0e-28 130.2 183 42.1
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 7.3e-27 125.6 265 34.7
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.2e-26 124.8 236 35.6
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 1.6e-26 124.4 233 34.3
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 6.8e-25 119.0 304 30.3
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 5.8e-24 115.9 230 35.2
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 1.9e-22 110.9 232 31.9
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.9e-22 110.9 227 37.0
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.4e-22 110.5 334 27.8
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 1.0e-20 105.1 114 48.2
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 1.7e-20 104.4 232 31.9
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 7.3e-19 99.0 134 44.0
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 2.1e-18 97.4 277 29.6
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 2.1e-18 97.4 313 24.9
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 1.8e-17 94.4 215 33.0
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 1.5e-16 91.3 194 31.4
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 9.9e-16 88.6 327 27.2
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 4.9e-15 86.3 157 33.8
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 4.9e-15 86.3 105 41.9
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 1.3e-12 78.2 324 26.2
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 4.8e-10 69.7 148 34.5
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 3.1e-09 67.0 241 26.1
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 2.6e-08 63.9 301 25.9
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 1.7e-07 61.2 276 23.2
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 1.1e-06 58.5 55 52.7
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.4e-06 58.2 121 33.1


User provided reference genes

Program Settings