Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 1.8e-168 595.9 315 100.0
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.3e-136 488.0 324 85.8
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 2.0e-135 486.1 322 85.4
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.0e-116 421.0 326 76.1
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.5e-114 416.8 326 75.5
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.4e-114 415.2 326 75.5
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 4.7e-108 395.2 293 80.2
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 5.2e-107 391.7 322 72.7
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.9e-96 356.7 323 66.6
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.2e-96 355.9 326 66.3
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 8.6e-94 347.8 319 64.9
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 8.6e-94 347.8 342 64.9
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.9e-93 346.7 327 66.1
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.9e-93 346.7 327 66.1
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.9e-93 346.7 320 65.6
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 2.2e-89 333.2 321 64.2
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 8.3e-89 331.3 322 63.4
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 8.3e-89 331.3 326 62.6
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 9.2e-88 327.8 320 62.5
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.5e-87 325.9 314 61.1
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.7e-86 323.6 319 61.4
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.3e-86 323.2 316 62.0
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.9e-85 320.1 318 61.3
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 3.3e-85 319.3 342 59.6
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 3.3e-85 319.3 322 64.6
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 2.1e-84 316.6 330 60.9
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 3.6e-84 315.8 328 61.0
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 3.6e-84 315.8 327 60.9
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.8e-83 313.5 328 60.7
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.1e-83 312.8 309 61.8
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 5.2e-83 312.0 328 60.7
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.4e-82 308.9 312 65.1
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.4e-82 308.9 312 65.1
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 4.9e-81 305.4 317 61.5
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.1e-80 302.4 311 64.3
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 7.8e-79 298.1 315 58.1
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.5e-77 293.9 319 58.6
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 9.6e-77 291.2 319 57.7
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 2.8e-76 289.7 322 59.9
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 8.1e-76 288.1 314 60.5
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 1.2e-74 284.3 320 56.6
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.5e-74 283.9 325 57.8
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 5.8e-74 282.0 319 55.2
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 9.9e-74 281.2 325 54.8
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.9e-73 279.6 319 57.1
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 6.4e-73 278.5 306 56.9
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 9.3e-72 274.6 314 54.8
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.6e-71 273.9 296 58.4
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.3e-70 270.8 337 53.4
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.3e-67 258.8 318 54.4
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 6.9e-67 258.5 287 57.8
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 1.2e-66 257.7 272 58.1
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 4.5e-66 255.8 334 51.8
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 7.6e-66 255.0 309 53.4
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 9.9e-66 254.6 323 54.2
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.3e-65 254.2 345 52.2
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 2.2e-65 253.4 286 56.6
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 1.1e-64 251.1 320 53.1
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 1.2e-63 247.7 291 52.9
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 1.6e-63 247.3 299 54.8
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 2.1e-63 246.9 317 53.0
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 5.1e-62 242.3 315 55.2
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.9e-61 240.4 323 52.9
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 7.4e-61 238.4 260 58.1
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 6.2e-60 235.3 343 47.2
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 8.1e-60 235.0 318 51.6
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 1.4e-59 234.2 302 54.6
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.0e-58 230.3 291 53.3
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.8e-58 228.8 284 54.9
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 2.2e-57 226.9 291 52.9
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.9e-57 226.5 283 54.4
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 8.4e-57 224.9 311 50.2
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.1e-56 224.6 311 49.8
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.4e-56 224.2 296 51.7
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.9e-56 223.8 298 52.7
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 1.9e-56 223.8 298 51.0
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 6.7e-54 215.3 315 50.2
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 1.1e-53 214.5 333 45.9
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 3.3e-53 213.0 341 49.3
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 4.3e-53 212.6 310 49.4
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 9.6e-53 211.5 328 48.2
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.8e-52 209.9 285 53.0
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 2.8e-52 209.9 353 44.5
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 5.3e-51 205.7 322 46.3
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 3.4e-50 203.0 307 48.2
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 7.6e-50 201.8 284 50.0
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 3.8e-49 199.5 302 47.4
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 8.4e-49 198.4 287 49.8
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 8.4e-49 198.4 295 49.2
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 5.5e-48 195.7 248 54.4
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 2.1e-47 193.7 357 43.7
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 4.6e-47 192.6 324 46.9
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 4.6e-47 192.6 292 48.3
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 7.9e-47 191.8 372 42.2
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 1.8e-46 190.7 328 47.3
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 3.9e-46 189.5 331 47.4
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 5.1e-46 189.1 294 47.6
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 6.7e-46 188.7 306 47.1
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 8.7e-46 188.3 327 48.0
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.9e-45 187.2 121 83.5
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 2.5e-45 186.8 287 47.0
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 3.3e-45 186.4 302 47.7
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.3e-45 186.4 220 55.0
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 4.3e-45 186.0 340 47.4
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 5.7e-45 185.7 311 44.4
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 1.6e-44 184.1 312 42.6
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 4.8e-44 182.6 205 58.5
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 2.4e-43 180.3 355 44.8
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 4.1e-43 179.5 327 45.9
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 5.3e-43 179.1 316 45.6
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.2e-42 177.9 285 48.4
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.4e-42 176.4 301 43.9
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 5.9e-42 175.6 289 46.0
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 1.0e-41 174.9 292 44.5
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.3e-41 174.5 218 50.9
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.1e-40 171.4 357 44.0
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.4e-40 171.0 296 45.6
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 2.5e-40 170.2 357 44.0
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 2.5e-40 170.2 357 44.0
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 2.5e-40 170.2 291 43.3
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 3.2e-40 169.9 307 44.6
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 4.2e-40 169.5 318 46.5
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 7.2e-40 168.7 303 46.2
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.6e-39 167.5 284 42.6
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 4.6e-39 166.0 358 43.9
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.1e-39 165.6 325 43.1
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 7.9e-39 165.2 218 52.3
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.0e-38 163.3 295 44.4
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 3.0e-38 163.3 288 47.6
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 3.9e-38 162.9 284 42.6
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 8.8e-38 161.8 357 43.1
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 8.8e-38 161.8 285 44.2
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 1.3e-36 157.9 358 43.3
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 1.3e-36 157.9 358 43.3
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.8e-35 154.1 367 41.7
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.2e-34 151.4 261 43.3
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.2e-34 151.4 261 43.3
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 4.5e-34 149.4 307 42.3
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 1.0e-33 148.3 358 41.6
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 3.8e-33 146.4 176 54.5
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 8.5e-33 145.2 246 43.5
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.7e-31 140.2 319 39.8
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 3.6e-31 139.8 234 47.0
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 5.7e-29 132.5 221 43.0
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 2.8e-28 130.2 291 40.2
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.1e-27 128.3 286 36.4
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 5.0e-25 119.4 80 76.2
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 8.8e-22 108.6 273 38.5
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.0e-21 107.5 318 37.7
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.3e-20 102.4 291 34.7
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 4.5e-18 96.3 136 51.5
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 2.2e-17 94.0 101 59.4
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 2.1e-15 87.4 100 55.0
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 2.1e-15 87.4 306 32.7
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 2.7e-15 87.0 271 32.1
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.7e-12 77.8 291 28.9
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 3.7e-12 76.6 71 59.2
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 1.1e-11 75.1 181 39.8
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.1e-11 73.6 146 39.7
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 2.0e-10 70.9 270 30.4
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 1.3e-09 68.2 352 28.4
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 3.2e-08 63.5 76 52.6
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.2e-07 61.6 322 28.0
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 1.6e-07 61.2 332 29.2
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 4.7e-07 59.7 304 28.3
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.0e-06 58.5 336 26.2
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 1.4e-06 58.2 359 25.9
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 1.4e-06 58.2 324 28.1
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 1.8e-06 57.8 82 45.1
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 1.8e-06 57.8 79 50.6
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.3e-06 57.4 354 26.6
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 3.0e-06 57.0 292 29.1
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 3.0e-06 57.0 313 28.8
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 6.8e-06 55.8 360 28.1
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 8.8e-06 55.5 360 28.1
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 8.8e-06 55.5 362 26.2
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 8.8e-06 55.5 347 27.4


User provided reference genes

Program Settings