Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 4.9e-250 867.5 474 100.0
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 9.3e-185 650.6 436 84.4
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 7.9e-184 647.5 436 83.9
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 5.7e-182 641.3 436 83.7
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-180 637.1 432 82.6
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 7.2e-177 624.4 432 81.5
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.6e-176 623.2 438 82.4
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 5.3e-172 608.2 437 80.8
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 5.2e-159 565.1 470 72.1
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 1.5e-153 547.0 449 72.8
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.9e-153 546.6 466 70.2
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.5e-153 546.2 466 69.7
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 1.4e-151 540.4 468 70.3
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 3.0e-151 539.3 486 68.5
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 4.0e-151 538.9 461 70.5
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.4e-150 535.8 463 69.1
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.4e-150 535.4 459 69.9
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.0e-147 526.6 362 81.8
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 2.3e-146 523.1 465 68.0
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 1.1e-145 520.8 454 68.7
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 6.1e-144 515.0 467 67.2
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.8e-140 503.4 441 68.9
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 4.1e-140 502.3 440 69.3
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.9e-139 498.4 464 65.5
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 5.0e-138 495.4 461 65.9
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 5.0e-138 495.4 483 64.0
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 5.0e-138 495.4 445 66.7
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 6.6e-138 495.0 461 64.6
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.5e-137 493.8 459 65.6
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 2.5e-137 493.0 469 65.9
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 3.3e-137 492.7 438 67.8
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.8e-136 489.6 444 66.2
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 1.4e-135 487.3 440 65.9
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 5.2e-135 485.3 441 66.2
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 4.4e-134 482.3 437 68.0
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.7e-133 480.3 448 65.4
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.6e-131 473.8 444 66.2
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 5.9e-131 471.9 438 65.8
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 1.3e-130 470.7 450 65.1
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 4.3e-129 465.7 346 76.9
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 8.0e-128 461.5 414 68.4
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.1e-127 461.1 480 61.2
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 2.3e-127 459.9 442 65.2
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.0e-127 459.1 461 62.5
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 8.9e-127 458.0 442 63.6
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.7e-125 453.8 458 61.6
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 3.7e-125 452.6 450 62.0
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 6.4e-125 451.8 437 64.1
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.1e-124 451.1 438 63.9
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 1.9e-124 450.3 467 60.8
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 7.0e-124 448.4 449 62.1
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 7.0e-124 448.4 448 62.9
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.6e-123 447.2 441 63.9
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 4.6e-123 445.7 442 62.7
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.0e-122 444.5 434 63.1
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.3e-122 444.1 434 62.9
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 5.0e-122 442.2 441 62.1
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.9e-121 440.3 655 47.8
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 5.6e-121 438.7 433 62.4
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 7.3e-121 438.3 466 59.2
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 9.5e-121 438.0 436 61.7
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 9.5e-121 438.0 449 61.9
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 2.1e-120 436.8 436 61.9
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.1e-119 434.5 433 61.4
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.1e-119 434.5 450 62.2
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 1.4e-119 434.1 436 62.8
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.2e-118 431.0 481 59.0
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.5e-118 430.6 442 60.6
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 9.9e-118 427.9 494 57.9
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 1.3e-114 417.5 463 57.0
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.9e-113 413.7 463 57.9
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 4.3e-113 412.5 430 60.7
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 4.3e-113 412.5 430 60.7
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 4.7e-112 409.1 426 60.1
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 3.1e-111 406.4 436 58.5
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.5e-110 404.1 430 59.3
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 5.8e-110 402.1 430 59.3
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 6.4e-109 398.7 463 55.7
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.4e-108 396.7 436 57.3
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 7.1e-108 395.2 425 60.0
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.0e-106 389.8 473 56.0
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 9.6e-105 384.8 435 56.8
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 1.2e-104 384.4 432 58.3
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 2.4e-103 380.2 423 56.7
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 2.4e-103 380.2 443 56.0
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 3.2e-100 369.8 436 56.7
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 9.3e-100 368.2 435 56.3
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.7e-98 364.0 439 54.9
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 9.6e-97 358.2 524 47.1
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 6.9e-95 352.1 443 50.3
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.5e-94 350.9 422 55.7
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 2.9e-93 346.7 465 51.2
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 8.4e-93 345.1 461 51.4
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 2.8e-88 330.1 451 49.9
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 4.0e-87 326.2 426 48.8
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 5.8e-86 322.4 425 53.2
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.7e-85 320.9 427 52.5
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 5.5e-84 315.8 472 47.2
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 7.4e-81 305.4 260 70.8
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 3.7e-80 303.1 303 62.7
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 1.4e-79 301.2 456 48.2
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 2.4e-79 300.4 341 54.0
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 6.0e-75 285.8 442 47.5
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.1e-73 281.6 291 56.7
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.4e-71 274.6 232 68.1
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 5.9e-62 242.7 247 54.7
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.7e-59 233.0 312 51.3
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 3.9e-58 229.9 501 40.3
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 3.8e-53 213.4 297 46.5
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.7e-51 207.2 520 36.0
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 4.7e-51 206.5 419 37.9
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 6.5e-37 159.5 328 36.3
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 9.4e-36 155.6 171 58.5
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.0e-34 152.1 248 43.5
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.3e-32 145.2 369 35.2
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.5e-30 137.1 88 85.2
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.7e-24 118.2 202 43.6
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 2.8e-24 117.5 202 43.6
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 4.9e-24 116.7 188 45.7
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 6.3e-24 116.3 93 68.8
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 6.3e-24 116.3 93 68.8
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 9.5e-20 102.4 161 44.7
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 3.6e-19 100.5 156 46.2
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.1e-15 89.0 347 30.8
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 2.4e-15 87.8 86 60.5
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 1.6e-14 85.1 246 31.7
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 7.3e-12 76.3 50 76.0
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 5.2e-10 70.1 188 36.7
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.4e-09 67.4 223 34.1
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 6.4e-08 63.2 76 48.7


User provided reference genes

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