Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.3e-176 622.9 304 100.0
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 3.5e-169 598.2 304 94.1
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 2.4e-165 585.5 304 93.8
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.0e-164 582.4 304 92.1
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.5e-164 581.3 304 92.1
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.4e-163 577.0 304 91.8
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.0e-152 543.5 301 84.1
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 3.0e-152 542.0 303 84.2
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 3.3e-151 538.5 297 83.8
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.2e-150 535.8 301 83.1
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 3.7e-150 535.0 301 85.0
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 8.2e-150 533.9 301 82.1
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.4e-149 533.1 302 83.8
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.4e-149 532.3 304 81.2
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 1.2e-148 530.0 300 81.7
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 4.5e-148 528.1 302 81.5
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 7.7e-148 527.3 302 82.8
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.0e-147 526.9 300 81.0
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 2.2e-147 525.8 304 80.6
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 5.0e-147 524.6 301 82.1
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 8.5e-147 523.9 304 80.3
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 1.1e-146 523.5 301 80.7
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.9e-146 522.7 301 82.1
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.9e-146 522.7 301 81.1
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.9e-146 522.7 309 80.9
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 9.4e-146 520.4 304 78.3
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.6e-145 519.6 304 78.9
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.6e-145 519.6 302 80.1
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 3.6e-145 518.5 308 78.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 4.6e-145 518.1 302 79.8
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 7.9e-145 517.3 302 80.1
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.0e-144 516.9 308 78.2
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.0e-144 516.9 302 79.8
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.4e-144 516.5 304 78.6
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.8e-144 516.2 326 77.6
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.3e-144 515.8 307 80.1
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 3.9e-144 515.0 302 79.5
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 3.9e-144 515.0 302 79.5
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 5.1e-144 514.6 304 79.6
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.1e-143 513.5 303 77.6
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 4.3e-143 511.5 302 78.8
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 4.3e-143 511.5 301 78.7
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 5.7e-143 511.1 302 78.5
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 9.7e-143 510.4 302 77.8
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.2e-142 509.2 302 79.1
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 3.7e-142 508.4 299 78.9
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 4.8e-142 508.1 303 78.2
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 4.8e-142 508.1 299 77.9
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 1.4e-141 506.5 302 78.5
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 3.1e-141 505.4 302 77.5
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 9.1e-141 503.8 300 78.7
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.0e-140 502.7 301 78.1
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 7.7e-140 500.7 300 77.3
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 7.7e-140 500.7 299 75.9
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 7.7e-140 500.7 302 76.2
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 2.2e-139 499.2 301 76.1
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.9e-139 498.8 299 76.3
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 2.9e-139 498.8 299 75.6
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 2.9e-139 498.8 302 77.2
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 6.5e-139 497.7 300 76.3
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 6.5e-139 497.7 301 75.1
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 6.5e-139 497.7 302 75.8
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.9e-138 496.1 304 76.0
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 3.2e-138 495.4 302 75.5
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 4.2e-138 495.0 307 76.5
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 7.2e-138 494.2 301 75.7
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 9.4e-138 493.8 301 76.4
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 9.4e-138 493.8 302 76.2
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.1e-137 492.7 376 64.9
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 2.1e-137 492.7 300 76.0
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 2.7e-137 492.3 298 75.5
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.7e-137 492.3 301 77.4
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 4.7e-137 491.5 302 75.2
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 7.9e-137 490.7 298 75.5
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 1.8e-136 489.6 299 75.6
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 2.3e-136 489.2 299 74.2
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 6.7e-136 487.6 301 76.7
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.5e-135 486.5 301 74.1
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 2.0e-135 486.1 300 74.7
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 2.6e-135 485.7 301 74.4
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 2.6e-135 485.7 372 65.1
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 3.3e-135 485.3 308 73.7
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 4.4e-135 485.0 305 74.4
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.7e-134 483.0 300 73.3
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.7e-134 483.0 338 69.2
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 8.2e-134 480.7 302 74.5
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 1.8e-133 479.6 301 73.1
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 2.4e-133 479.2 298 73.5
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 9.1e-133 477.2 299 72.9
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.2e-132 476.9 299 72.9
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 1.3e-131 473.4 301 71.1
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 2.9e-131 472.2 311 73.3
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.5e-130 469.9 301 74.1
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.2e-130 468.4 301 70.8
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 7.2e-130 467.6 301 72.4
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 7.2e-130 467.6 305 71.8
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 2.1e-129 466.1 301 70.1
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 4.7e-129 464.9 304 72.4
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.7e-129 464.9 299 70.2
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 8.8e-128 460.7 301 73.1
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 7.7e-124 447.6 271 78.6
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 1.3e-123 446.8 307 73.0
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 2.5e-122 442.6 297 66.7
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 4.4e-119 431.8 297 66.7
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.6e-116 423.3 238 83.6
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 3.8e-115 418.7 260 75.4
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 8.8e-112 407.5 262 71.4
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.3e-107 393.7 265 67.9
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 4.3e-98 362.1 299 55.2
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 3.1e-96 355.9 201 82.6
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.5e-95 353.6 299 58.2
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 5.8e-95 351.7 268 64.9
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 9.2e-93 344.4 216 70.8
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 3.3e-90 335.9 291 54.6
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 6.2e-89 331.6 297 53.9
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 2.3e-88 329.7 201 73.1
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.9e-86 322.8 299 54.8
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 5.4e-85 318.5 177 81.4
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 2.3e-83 313.2 177 80.2
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 5.2e-72 275.4 179 73.2
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-69 267.7 181 72.9
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.1e-68 263.5 237 51.9
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.1e-65 253.4 143 81.1
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 3.1e-56 223.0 170 60.0
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.9e-53 213.8 183 56.3
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 3.0e-51 206.5 129 76.0
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 6.7e-51 205.3 130 73.8
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 4.3e-50 202.6 121 78.5
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 4.0e-48 196.1 135 68.9
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.2e-46 190.3 107 81.3
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.7e-41 172.9 145 60.7
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 5.0e-38 162.5 101 74.3
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 9.3e-37 158.3 102 72.5
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.3e-34 149.4 102 67.6
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.8e-33 146.7 102 68.6
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 8.8e-19 98.6 52 78.8
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 8.8e-19 98.6 74 60.8


User provided reference genes

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