Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 4.0e-34 147.5 73 100.0
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.7e-30 134.8 73 89.0
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.7e-30 134.8 73 89.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 5.9e-30 133.7 73 87.7
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 5.9e-30 133.7 73 87.7
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.5e-28 129.0 73 82.2
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 2.5e-28 128.3 75 85.3
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 2.1e-27 125.2 73 82.2
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 2.3e-26 121.7 73 78.1
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.3e-26 121.7 73 80.8
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.2e-25 119.4 74 79.7
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.2e-25 119.4 74 79.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.2e-25 119.4 75 81.3
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.2e-25 119.4 73 79.5
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.5e-25 119.0 74 79.7
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 2.6e-25 118.2 74 79.7
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.4e-25 117.9 73 80.8
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.4e-25 117.9 74 79.7
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 5.7e-25 117.1 73 75.3
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 5.7e-25 117.1 74 77.0
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 7.5e-25 116.7 73 74.0
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 9.8e-25 116.3 75 82.7
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 9.8e-25 116.3 74 77.0
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.3e-24 115.9 74 77.0
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.7e-24 115.5 73 75.3
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 1.7e-24 115.5 73 74.0
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.7e-24 115.5 74 77.0
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 2.2e-24 115.2 73 71.2
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.2e-24 115.2 73 75.3
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 6.3e-24 113.6 73 74.0
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 8.3e-24 113.2 75 80.0
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 1.1e-23 112.8 74 77.0
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.1e-23 112.8 73 72.6
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 1.8e-23 112.1 74 78.4
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.4e-23 111.7 73 72.6
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.4e-23 111.7 73 72.6
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 4.1e-23 110.9 74 75.7
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 9.1e-23 109.8 73 72.6
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 9.1e-23 109.8 73 72.6
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.0e-22 108.6 73 71.2
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 5.9e-22 107.1 74 75.7
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 7.7e-22 106.7 73 72.6
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 7.7e-22 106.7 73 67.1
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 7.7e-22 106.7 73 68.5
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 2.9e-21 104.8 74 73.0
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 3.8e-21 104.4 76 72.4
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 3.8e-21 104.4 71 70.4
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-20 102.4 76 69.7
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.5e-20 102.4 60 76.7
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 2.5e-20 101.7 74 67.6
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 3.3e-20 101.3 75 70.7
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 3.3e-20 101.3 75 69.3
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.2e-20 100.9 71 71.8
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.2e-20 100.9 61 80.3
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 7.2e-20 100.1 75 66.7
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 7.2e-20 100.1 73 68.5
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 7.2e-20 100.1 73 63.0
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.2e-19 99.4 76 64.5
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.2e-19 99.4 75 72.0
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.1e-19 98.6 74 68.9
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 3.6e-19 97.8 73 67.1
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 3.6e-19 97.8 80 63.8
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 4.7e-19 97.4 79 72.2
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 4.7e-19 97.4 73 65.8
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 4.7e-19 97.4 65 70.8
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.0e-18 96.3 75 64.0
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 4.0e-18 94.4 73 64.4
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 5.2e-18 94.0 76 65.8
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.2e-18 94.0 75 62.7
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 5.2e-18 94.0 75 60.0
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 5.2e-18 94.0 79 64.6
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 6.8e-18 93.6 61 67.2
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 6.8e-18 93.6 71 63.4
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 8.9e-18 93.2 78 64.1
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.9e-18 93.2 78 62.8
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.9e-18 93.2 78 61.5
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 1.2e-17 92.8 78 61.5
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.5e-17 92.4 78 61.5
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.5e-17 92.4 78 61.5
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.0e-17 92.0 71 63.4
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.6e-17 91.7 80 61.2
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.6e-17 91.7 67 62.7
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-17 91.7 67 62.7
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-17 91.7 67 62.7
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-17 91.7 67 62.7
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.6e-17 91.7 67 62.7
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.6e-17 91.7 64 73.4
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 2.6e-17 91.7 78 60.3
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 2.6e-17 91.7 78 60.3
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.4e-17 91.3 71 60.6
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 4.4e-17 90.9 67 61.2
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 4.4e-17 90.9 78 60.3
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 5.7e-17 90.5 78 61.5
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 7.5e-17 90.1 59 67.8
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 9.8e-17 89.7 67 61.2
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-16 88.6 67 62.7
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.2e-16 88.6 67 62.7
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 2.2e-16 88.6 79 62.0
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.2e-16 88.6 76 61.8
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 4.9e-16 87.4 55 72.7
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 4.9e-16 87.4 79 60.8
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 4.9e-16 87.4 79 60.8
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 6.3e-16 87.0 67 61.2
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.1e-15 86.3 72 58.3
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.1e-15 86.3 72 62.5
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.4e-15 85.9 82 57.3
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.4e-15 85.9 79 58.2
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 1.8e-15 85.5 57 75.4
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.2e-15 84.7 64 62.5
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.1e-15 84.3 81 56.8
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 5.4e-15 84.0 72 58.3
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 5.4e-15 84.0 77 58.4
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 5.4e-15 84.0 50 72.0
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 5.4e-15 84.0 75 52.0
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 9.2e-15 83.2 80 55.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.6e-14 82.4 72 58.3
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 2.7e-14 81.6 54 70.4
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.7e-14 81.6 70 61.4
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.5e-14 81.3 74 55.4
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 3.5e-14 81.3 62 59.7
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 3.5e-14 81.3 64 70.3
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 4.6e-14 80.9 75 53.3
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.9e-14 80.5 45 75.6
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 7.8e-14 80.1 61 62.3
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 7.8e-14 80.1 76 55.3
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 7.8e-14 80.1 80 50.0
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 7.8e-14 80.1 56 71.4
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 7.8e-14 80.1 70 54.3
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.0e-13 79.7 62 58.1
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.3e-13 79.3 79 53.2
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.7e-13 79.0 45 73.3
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.3e-13 78.6 50 68.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 2.9e-13 78.2 80 47.5
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.9e-13 78.2 66 59.1
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 6.6e-13 77.0 64 54.7
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 8.6e-13 76.6 73 52.1
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 8.6e-13 76.6 75 53.3
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-12 76.3 74 51.4
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-12 76.3 75 52.0
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-12 76.3 75 52.0
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-12 76.3 75 52.0
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-12 76.3 75 52.0
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.1e-12 76.3 75 52.0
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 2.5e-12 75.1 62 54.8
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.3e-12 74.7 45 71.1
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 4.3e-12 74.3 72 51.4
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.6e-11 72.4 53 54.7
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 6.1e-11 70.5 60 55.0
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.8e-10 68.9 51 51.0
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 3.1e-10 68.2 53 56.6
Nn1g04967 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.9e-08 61.6 49 65.3
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.7e-08 61.2 35 80.0
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.0e-06 55.5 43 58.1


User provided reference genes

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