Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 5.3e-218 760.8 394 100.0
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.0e-189 666.8 386 88.3
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.7e-188 661.0 386 87.6
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.7e-187 659.4 386 87.3
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 3.1e-181 638.6 384 83.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 5.1e-160 568.2 386 78.8
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.8e-150 535.8 387 69.8
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.6e-150 535.4 388 70.6
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 6.2e-150 534.6 388 70.4
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.1e-149 533.9 387 70.8
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.8e-149 533.1 386 75.9
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.5e-148 530.0 386 70.5
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 2.6e-148 529.3 387 69.0
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.5e-148 528.5 388 68.8
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 5.8e-148 528.1 388 69.8
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 3.8e-147 525.4 388 68.8
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 6.4e-147 524.6 388 68.6
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 6.4e-147 524.6 388 67.8
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.4e-147 524.6 388 69.3
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 1.1e-146 523.9 384 68.5
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.4e-146 523.5 388 69.8
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.4e-146 523.5 388 68.0
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.4e-146 523.5 388 68.8
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.9e-146 523.1 384 68.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.4e-146 522.7 386 69.7
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.2e-145 520.4 388 68.6
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.6e-145 520.0 381 69.3
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.1e-145 519.6 388 67.5
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 7.9e-145 517.7 389 68.4
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.3e-144 516.9 388 68.0
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 5.1e-144 515.0 389 66.6
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 3.3e-143 512.3 388 66.5
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.3e-143 511.9 389 67.1
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 7.4e-143 511.1 388 67.0
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 9.6e-143 510.8 383 66.3
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.1e-142 509.6 387 67.7
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 2.1e-142 509.6 406 66.0
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.7e-142 508.8 388 67.0
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 6.2e-142 508.1 389 66.6
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 6.2e-142 508.1 388 66.2
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 1.4e-141 506.9 388 65.7
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-141 506.5 388 66.0
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.8e-141 506.5 389 67.1
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 2.4e-141 506.1 385 66.0
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 5.3e-141 505.0 385 66.0
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 6.9e-141 504.6 388 67.0
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 9.0e-141 504.2 387 65.6
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.5e-140 503.4 388 65.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.4e-140 502.3 388 66.2
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 4.5e-140 501.9 386 65.3
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 5.8e-140 501.5 385 65.5
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 9.9e-140 500.7 388 65.2
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.3e-139 500.4 388 64.9
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.8e-139 498.8 385 66.5
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.4e-138 496.9 388 65.7
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.4e-138 496.9 387 66.1
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.9e-138 496.5 387 64.9
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.4e-138 496.1 386 63.7
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 2.4e-138 496.1 388 68.0
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 3.2e-138 495.7 393 65.4
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 7.1e-138 494.6 383 65.0
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.2e-137 493.8 388 64.9
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 1.6e-137 493.4 384 63.5
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 2.1e-137 493.0 390 63.3
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.1e-137 493.0 388 64.9
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.5e-137 492.3 388 65.5
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 1.0e-136 490.7 385 64.4
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.0e-136 490.7 383 64.5
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 2.3e-136 489.6 388 63.9
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 3.0e-136 489.2 390 65.4
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 2.5e-135 486.1 389 65.0
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 5.6e-135 485.0 383 65.0
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 9.6e-135 484.2 399 62.7
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 2.1e-134 483.0 384 64.3
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-134 482.3 386 64.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-134 482.3 386 64.0
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 4.8e-134 481.9 389 63.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.0e-133 478.8 388 63.7
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 5.3e-133 478.4 385 64.4
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 6.9e-133 478.0 414 61.8
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 6.9e-133 478.0 385 64.4
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.9e-133 478.0 388 64.2
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.6e-132 476.1 387 64.3
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 2.6e-132 476.1 392 63.3
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 7.6e-132 474.6 388 63.9
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.0e-131 474.2 388 64.9
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.7e-131 473.4 385 64.7
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 4.9e-131 471.9 385 65.2
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 4.9e-131 471.9 348 68.7
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 8.4e-131 471.1 387 64.1
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 8.4e-131 471.1 388 63.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.1e-130 470.7 387 63.3
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-130 470.3 386 63.5
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 7.1e-130 468.0 386 63.0
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 7.1e-130 468.0 351 68.4
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 2.1e-129 466.5 386 63.0
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 4.6e-129 465.3 388 61.1
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 4.6e-129 465.3 385 63.1
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 6.0e-129 464.9 385 64.4
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 1.0e-128 464.2 389 62.0
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 1.0e-128 464.2 389 62.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.0e-128 464.2 385 64.2
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.9e-128 462.2 421 59.1
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.9e-128 462.2 420 58.8
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.1e-127 460.7 347 66.9
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.3e-127 459.1 420 58.8
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.8e-126 456.1 385 62.3
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.3e-126 454.9 420 58.6
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 3.4e-124 449.1 380 63.4
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.6e-121 440.3 350 64.0
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 7.4e-119 431.4 394 56.9
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.2e-118 429.9 352 62.8
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 2.8e-118 429.5 385 60.5
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 6.3e-118 428.3 390 59.2
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.4e-117 427.2 337 63.5
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 3.1e-117 426.0 398 57.0
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.2e-113 414.1 394 53.8
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 2.0e-111 406.8 394 54.3
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 4.4e-111 405.6 400 54.5
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 7.4e-111 404.8 383 54.3
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.6e-108 396.4 388 54.9
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.7e-107 393.7 398 54.0
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 5.3e-101 372.1 297 61.3
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 6.7e-96 355.1 422 48.1
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 5.9e-92 342.0 271 63.8
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 7.2e-82 308.5 376 47.9
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 1.4e-80 304.3 441 41.5
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.6e-76 290.8 265 58.1
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 3.5e-76 289.7 265 56.2
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 9.5e-74 281.6 301 53.5
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.6e-73 280.8 384 43.0
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 8.6e-59 231.9 461 35.4
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 9.2e-53 211.8 244 48.8
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.6e-44 184.5 168 56.5
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 7.8e-44 182.2 143 65.7
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.4e-39 166.8 152 63.2
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.4e-39 166.4 398 31.4
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.9e-38 163.7 178 52.8
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.4e-37 161.4 108 73.1
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 2.8e-33 147.1 128 61.7
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 1.8e-27 127.9 171 42.7
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-27 127.5 163 46.0
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 8.7e-27 125.6 89 73.0
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.1e-24 117.1 213 37.1
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 6.9e-24 115.9 79 70.9
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-23 114.8 155 45.2
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.4e-22 109.0 118 49.2
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 2.5e-21 107.5 138 46.4
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 5.6e-18 96.3 81 54.3
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 3.1e-16 90.5 85 51.8
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.3e-16 89.7 82 51.2
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 9.0e-16 89.0 124 46.0
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 9.0e-16 89.0 124 45.2
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 2.6e-15 87.4 52 78.8
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 2.2e-14 84.3 123 43.1
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 7.9e-12 75.9 108 39.8
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 1.3e-11 75.1 79 45.6
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 2.5e-10 70.9 86 47.7
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 9.7e-10 68.9 51 58.8
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 6.9e-08 62.8 39 82.1
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-07 62.0 98 43.9
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 4.5e-07 60.1 45 66.7
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 1.7e-06 58.2 66 50.0
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 1.7e-06 58.2 86 43.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 2.9e-06 57.4 36 72.2
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 3.8e-06 57.0 40 70.0


User provided reference genes

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