Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 2.3e-102 375.6 189 100.0
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 4.8e-84 314.7 188 83.5
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 7.2e-80 300.8 189 79.4
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 6.8e-78 294.3 189 78.3
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 2.2e-76 289.3 189 76.7
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 1.0e-73 280.4 189 75.7
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.3e-60 236.9 189 63.5
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 7.8e-58 227.6 185 67.6
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 6.6e-57 224.6 186 64.5
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 1.9e-56 223.0 186 65.1
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 3.3e-56 222.2 188 65.4
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 4.3e-56 221.9 184 66.3
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 5.6e-56 221.5 187 64.7
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 3.6e-55 218.8 180 65.0
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 5.2e-54 214.9 186 62.9
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 5.8e-53 211.5 193 59.1
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 9.9e-53 210.7 168 67.9
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 9.9e-53 210.7 187 62.6
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 1.3e-52 210.3 192 60.4
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 1.3e-52 210.3 150 70.7
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 1.7e-52 209.9 168 66.7
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 2.2e-52 209.5 184 63.0
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 3.7e-52 208.8 188 58.5
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 4.9e-52 208.4 154 70.8
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 6.4e-52 208.0 158 66.5
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 8.3e-52 207.6 181 61.9
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 8.3e-52 207.6 190 61.6
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 1.1e-51 207.2 158 65.8
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.6e-50 203.4 164 67.1
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 1.6e-50 203.4 186 59.1
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 7.8e-50 201.1 184 60.9
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 2.3e-49 199.5 182 61.5
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 6.6e-49 198.0 183 60.1
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 2.5e-48 196.1 183 60.1
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 1.2e-47 193.7 183 58.5
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 1.6e-47 193.4 182 58.2
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 3.6e-47 192.2 152 66.4
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 3.6e-47 192.2 183 57.9
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 3.6e-47 192.2 170 62.9
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 4.7e-47 191.8 154 66.9
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.2e-47 191.4 142 66.2
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 1.1e-46 190.7 178 57.3
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 4.0e-46 188.7 185 58.9
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 4.0e-46 188.7 153 62.7
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 1.5e-45 186.8 166 60.2
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 2.6e-45 186.0 183 59.6
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 3.4e-45 185.7 151 63.6
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 2.2e-44 183.0 156 60.3
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 2.2e-44 183.0 156 60.3
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 2.2e-44 183.0 156 60.3
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 2.2e-44 183.0 183 56.3
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 2.9e-44 182.6 185 55.7
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 2.9e-44 182.6 181 54.1
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 6.4e-44 181.4 183 54.6
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 6.4e-44 181.4 129 72.1
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.1e-43 180.6 184 57.6
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 5.4e-43 178.3 181 57.5
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 7.1e-43 177.9 190 52.6
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 1.2e-42 177.2 167 56.9
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 2.1e-42 176.4 103 79.6
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 1.7e-41 173.3 171 56.7
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.0e-41 172.6 98 83.7
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 3.0e-41 172.6 161 56.5
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 3.9e-41 172.2 184 53.3
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 6.6e-41 171.4 138 61.6
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 8.7e-41 171.0 183 53.6
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 3.3e-40 169.1 125 67.2
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 5.6e-40 168.3 106 72.6
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 1.2e-39 167.2 125 66.4
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 1.2e-39 167.2 128 66.4
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 1.2e-39 167.2 181 49.7
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 1.6e-39 166.8 190 53.2
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 2.1e-39 166.4 138 60.9
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 2.1e-39 166.4 134 64.2
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 2.8e-39 166.0 165 55.8
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 1.4e-38 163.7 110 70.9
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 2.4e-38 162.9 141 56.7
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 3.1e-38 162.5 171 55.0
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 1.5e-37 160.2 183 52.5
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 2.0e-37 159.8 173 51.4
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 4.4e-37 158.7 167 52.7
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 4.4e-37 158.7 183 51.4
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 4.4e-37 158.7 186 46.8
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 4.4e-37 158.7 125 63.2
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 7.6e-37 157.9 127 62.2
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 1.3e-36 157.1 183 50.3
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 1.3e-36 157.1 200 47.5
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 2.2e-36 156.4 168 55.4
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 3.8e-36 155.6 121 67.8
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 1.4e-35 153.7 153 54.9
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 1.4e-35 153.7 188 48.4
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 9.3e-35 151.0 182 49.5
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.2e-34 150.6 81 85.2
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 2.7e-34 149.4 185 48.1
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 3.5e-34 149.1 144 56.2
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 6.0e-34 148.3 122 61.5
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 6.0e-34 148.3 154 53.2
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 1.3e-33 147.1 122 61.5
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 1.3e-33 147.1 125 60.8
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 1.3e-33 147.1 125 60.8
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 1.3e-33 147.1 99 70.7
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.3e-33 147.1 99 70.7
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.3e-33 147.1 99 70.7
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 2.3e-33 146.4 122 62.3
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 3.0e-33 146.0 123 61.8
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 3.9e-33 145.6 122 60.7
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.9e-33 145.6 99 69.7
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 5.1e-33 145.2 92 73.9
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 6.6e-33 144.8 187 47.6
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 6.6e-33 144.8 125 60.0
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 8.7e-33 144.4 124 60.5
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 8.7e-33 144.4 99 69.7
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 3.1e-30 136.0 75 81.3
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 6.9e-30 134.8 95 63.2
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.3e-28 130.6 92 66.3
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 2.2e-28 129.8 172 42.4
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 2.7e-26 122.9 89 61.8
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.7e-25 117.9 106 56.6
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 2.8e-23 112.8 78 66.7
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.1e-23 111.3 93 60.2
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 8.1e-23 111.3 186 37.1
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 9.0e-22 107.8 72 66.7
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.5e-21 107.1 101 55.4
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 2.9e-20 102.8 184 39.1
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 3.8e-20 102.4 108 50.0
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.6e-18 97.1 106 50.9
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.7e-17 91.3 90 54.4
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 1.1e-16 90.9 123 39.8
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.8e-15 85.5 121 42.1
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 4.0e-14 82.4 146 37.0
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 2.0e-13 80.1 72 50.0
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 9.3e-11 71.2 86 40.7
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.2e-10 70.9 155 31.6
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.3e-09 67.4 110 41.8
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 2.3e-09 66.6 62 48.4
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 6.7e-09 65.1 41 73.2
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 4.1e-06 55.8 59 42.4


User provided reference genes

Program Settings