Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.1e-119 433.3 222 100.0
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 2.1e-102 375.9 218 84.4
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.5e-102 375.2 217 84.8
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 5.1e-101 371.3 218 83.0
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 3.3e-100 368.6 221 83.7
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.8e-99 365.5 221 82.4
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.9e-95 352.8 220 80.5
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 3.9e-93 345.1 199 85.9
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 8.8e-93 344.0 220 73.6
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 2.8e-91 339.0 220 74.1
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 3.7e-91 338.6 220 73.2
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 8.2e-91 337.4 220 73.6
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.1e-90 337.0 216 74.5
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.1e-90 337.0 220 73.2
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 2.4e-90 335.9 220 73.2
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 4.1e-90 335.1 219 72.6
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.1e-90 335.1 216 74.1
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.1e-90 335.1 216 74.1
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 5.3e-90 334.7 220 72.7
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 9.1e-90 334.0 220 70.5
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.2e-89 333.6 220 72.3
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.5e-89 333.2 220 71.4
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.0e-89 332.8 216 73.6
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 2.6e-89 332.4 220 71.8
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.0e-88 330.5 216 72.2
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.7e-88 329.7 219 71.2
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.2e-88 329.3 221 71.5
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 2.9e-88 328.9 220 72.3
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 3.8e-88 328.6 221 71.5
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 5.0e-88 328.2 215 74.4
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 6.5e-88 327.8 217 72.4
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 8.5e-88 327.4 217 73.3
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.1e-87 327.0 220 70.0
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.4e-87 326.6 218 70.2
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.5e-87 325.9 218 70.2
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 5.5e-87 324.7 220 73.2
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 5.5e-87 324.7 218 70.2
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 7.2e-87 324.3 217 70.0
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 7.2e-87 324.3 220 70.5
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 9.4e-87 323.9 221 69.2
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 9.4e-87 323.9 220 70.5
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.2e-86 323.6 218 69.7
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 2.1e-86 322.8 221 72.9
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 4.7e-86 321.6 220 70.9
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 6.1e-86 321.2 217 71.0
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 6.1e-86 321.2 220 67.3
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.0e-85 320.5 222 71.2
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.8e-85 319.7 214 68.2
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.8e-85 319.7 220 69.5
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.8e-85 319.7 221 69.2
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.3e-85 319.3 222 68.9
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 3.0e-85 318.9 220 70.5
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 3.0e-85 318.9 219 68.0
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 3.9e-85 318.5 220 70.9
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 3.9e-85 318.5 221 68.8
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 6.7e-85 317.8 221 69.7
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 6.7e-85 317.8 185 83.2
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 8.8e-85 317.4 218 70.2
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.5e-84 316.6 220 69.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.0e-84 316.2 220 70.0
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 7.4e-84 314.3 220 68.6
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.7e-83 313.2 220 69.1
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.2e-83 312.8 220 68.6
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 4.8e-83 311.6 220 70.9
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 8.2e-83 310.8 215 68.4
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.4e-82 310.1 221 70.1
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.8e-82 309.7 217 68.7
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 3.1e-82 308.9 220 65.9
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 7.0e-82 307.8 221 67.9
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 7.0e-82 307.8 220 65.5
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 2.6e-81 305.8 216 67.6
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.0e-80 303.9 221 66.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.3e-80 303.5 220 63.6
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 2.9e-80 302.4 247 61.1
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.9e-80 302.4 217 68.2
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.8e-80 302.0 216 65.3
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 5.0e-80 301.6 216 65.7
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 6.5e-80 301.2 216 64.8
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 6.5e-80 301.2 199 71.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.5e-79 300.1 216 65.3
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 1.9e-79 299.7 215 66.0
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 2.5e-79 299.3 220 66.8
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 3.2e-79 298.9 250 60.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 9.4e-79 297.4 216 63.4
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 9.4e-79 297.4 216 63.4
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 9.4e-79 297.4 216 63.4
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.6e-78 295.4 220 64.1
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.6e-78 295.4 217 65.9
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 6.1e-78 294.7 216 64.4
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 8.0e-78 294.3 216 62.5
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 8.0e-78 294.3 216 62.5
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.8e-77 293.1 216 63.4
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 2.3e-77 292.7 216 63.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.8e-74 283.1 246 58.9
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.8e-74 283.1 215 64.7
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 4.1e-74 282.0 221 66.1
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.1e-74 282.0 215 64.2
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.1e-74 282.0 215 64.2
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 9.1e-74 280.8 279 54.5
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.5e-73 278.5 216 61.6
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.3e-72 276.9 196 67.3
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.7e-72 276.6 216 59.3
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.2e-72 276.2 216 59.3
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 2.9e-72 275.8 216 58.8
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 5.0e-72 275.0 215 61.4
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.9e-71 273.1 218 64.2
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-71 272.7 216 57.9
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.2e-71 271.9 215 60.9
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 7.2e-71 271.2 216 58.8
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 9.4e-71 270.8 217 59.0
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 9.4e-71 270.8 217 59.0
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 9.4e-71 270.8 213 61.0
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 9.4e-71 270.8 213 62.4
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 1.6e-70 270.0 220 60.9
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 2.7e-70 269.2 217 58.5
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 2.7e-70 269.2 217 58.5
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 2.7e-70 269.2 217 58.5
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 3.6e-70 268.9 192 66.7
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.7e-70 268.5 220 60.5
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 5.2e-69 265.0 214 61.7
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.2e-67 259.6 192 64.1
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 2.2e-67 259.6 184 67.9
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.1e-66 257.3 220 57.7
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 7.0e-66 254.6 221 56.1
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 7.0e-66 254.6 221 56.1
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 6.5e-64 248.1 199 56.3
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 7.2e-63 244.6 210 57.1
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.0e-61 239.2 188 59.0
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 5.2e-61 238.4 209 55.5
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.4e-58 230.3 146 74.0
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.4e-58 230.3 160 67.5
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 2.4e-58 229.6 146 72.6
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 9.2e-58 227.6 158 67.1
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.3e-56 223.0 233 53.6
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.6e-54 216.9 220 50.9
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 2.1e-54 216.5 173 59.0
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.8e-53 211.5 216 53.7
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.7e-51 206.8 172 59.9
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-50 204.1 210 48.6
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 3.5e-49 199.1 214 45.3
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 3.9e-48 195.7 215 45.1
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 2.5e-47 193.0 213 46.5
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.5e-44 183.7 145 55.9
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 4.9e-43 178.7 134 65.7
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 6.6e-40 168.3 120 65.8
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 3.1e-37 159.5 116 64.7
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 3.4e-36 156.0 185 42.2
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.0e-33 145.2 124 58.9
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 1.2e-30 137.5 100 66.0
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 4.7e-30 135.6 147 45.6
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 4.0e-29 132.5 86 70.9
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 2.5e-23 113.2 216 31.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.1e-21 107.8 148 43.9
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.1e-21 107.8 148 43.9
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 3.4e-20 102.8 73 64.4
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 8.4e-19 98.2 62 79.0
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 2.7e-17 93.2 73 63.0
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.5e-15 87.4 76 57.9
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 2.0e-12 77.0 53 62.3
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.7e-11 73.9 71 50.7
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 3.9e-08 62.8 38 78.9
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 5.1e-08 62.4 46 67.4


User provided reference genes

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