Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib093G2023 Durio zibethinus HOM05D007577 ORTHO05D002366 7.1e-77 290.8 179 100.0
Thecc.08G067500 Theobroma cacao HOM05D007577 ORTHO05D002366 4.8e-65 251.5 187 76.5
Duzib041G0196 Durio zibethinus HOM05D007577 ORTHO05D002366 1.6e-60 236.5 187 75.4
Duzib116G0880 Durio zibethinus HOM05D007577 ORTHO05D002366 2.7e-52 209.1 174 74.7
COL.COLO4_35193 Corchorus olitorius HOM05D007577 ORTHO05D002366 9.0e-48 194.1 211 56.4
Gohir.A05G221500 Gossypium hirsutum HOM05D007577 ORTHO05D002366 1.1e-45 187.2 185 61.6
Gohir.A02G077300 Gossypium hirsutum HOM05D007577 ORTHO05D002366 2.5e-45 186.0 180 60.0
Gohir.D05G224200 Gossypium hirsutum HOM05D007577 ORTHO05D002366 7.2e-45 184.5 185 60.5
Gorai.009G231700 Gossypium raimondii HOM05D007577 ORTHO05D002366 2.7e-44 182.6 185 60.0
QL09p017111 Quercus lobata HOM05D007577 ORTHO05D002366 2.7e-44 182.6 185 59.5
Gorai.005G095300 Gossypium raimondii HOM05D007577 ORTHO05D002366 1.3e-41 173.7 181 61.9
Potri.005G158400 Populus trichocarpa HOM05D007577 ORTHO05D002366 6.3e-41 171.4 184 66.3
Gohir.D02G084600 Gossypium hirsutum HOM05D007577 ORTHO05D002366 1.8e-40 169.9 181 60.2
Sabra05G0120900 Salix brachista HOM05D007577 ORTHO05D002366 1.8e-40 169.9 161 67.7
Haze_22347 Corylus avellana HOM05D007577 ORTHO05D002366 5.3e-40 168.3 196 57.1
Manes.02G147100 Manihot esculenta HOM05D007577 ORTHO05D002366 9.1e-40 167.5 174 56.9
Manes.18G061400 Manihot esculenta HOM05D007577 ORTHO05D002366 8.5e-38 161.0 172 64.5
Peaxi162Scf00281g00079 Petunia axillaris HOM05D007577 ORTHO05D002366 4.2e-37 158.7 174 52.3
Phvul.008G179400 Phaseolus vulgaris HOM05D007577 ORTHO05D002366 4.2e-37 158.7 186 48.9
CiPaw.08G053900 Carya illinoinensis HOM05D007577 ORTHO05D002366 9.4e-37 157.5 189 60.3
Glyma.14G179800 Glycine max HOM05D007577 ORTHO05D002366 2.1e-36 156.4 190 58.4
Glyma.02G212100 Glycine max HOM05D007577 ORTHO05D002366 1.4e-35 153.7 188 50.0
Nitab4.5_0001507g0070 Nicotiana tabacum HOM05D007577 ORTHO05D002366 3.0e-35 152.5 177 52.5
VMungo0647G2546 Vigna mungo HOM05D007577 ORTHO05D002366 3.9e-35 152.1 187 46.5
Atru.chr13.1051 Acer truncatum HOM05D007577 ORTHO05D002366 1.1e-34 150.6 199 61.8
FvH4_5g35850 Fragaria vesca HOM05D007577 ORTHO05D002366 1.1e-34 150.6 214 47.7
Solyc04g076010.3 Solanum lycopersicum HOM05D007577 ORTHO05D002366 1.1e-34 150.6 195 47.7
FAN08G0887 Fragaria x ananassa HOM05D007577 ORTHO05D002366 2.6e-34 149.4 214 46.3
FAN18G2443 Fragaria x ananassa HOM05D007577 ORTHO05D002366 2.6e-34 149.4 214 47.2
Lalb_Chr17g0344401 Lupinus albus HOM05D007577 ORTHO05D002366 3.3e-34 149.1 184 54.9
arahy.Tifrunner.gnm1.ann1.15IZES Arachis hypogaea HOM05D007577 ORTHO05D002366 7.4e-34 147.9 201 53.7
Cpa.g.sc608.1 Carica papaya HOM05D007577 ORTHO05D002366 7.4e-34 147.9 217 59.0
TWI12G1315 Tripterygium wilfordii HOM05D007577 ORTHO05D002366 7.4e-34 147.9 188 51.1
TAR376G0287 Trochodendron aralioides HOM05D007577 ORTHO05D002366 7.4e-34 147.9 184 56.5
FAN04G3208 Fragaria x ananassa HOM05D007577 ORTHO05D002366 4.8e-33 145.2 215 45.6
Lalb_Chr04g0253001 Lupinus albus HOM05D007577 ORTHO05D002366 4.8e-33 145.2 171 52.0
Rhsim06G0074200 Rhododendron simsii HOM05D004661 ORTHO05D005827 4.8e-33 145.2 174 56.3
vmacro21310 Vaccinium macrocarpon HOM05D007577 ORTHO05D002366 1.1e-32 144.1 175 46.9
Nitab4.5_0006922g0010 Nicotiana tabacum HOM05D007577 ORTHO05D002366 1.8e-32 143.3 174 51.1
Cc10_g15550 Coffea canephora HOM05D007577 ORTHO05D002366 2.4e-32 142.9 185 49.2
Eucgr.F00405 Eucalyptus grandis HOM05D007577 ORTHO05D002366 3.1e-32 142.5 197 48.7
Lalb_Chr10g0102661 Lupinus albus HOM05D007577 ORTHO05D002366 3.1e-32 142.5 185 55.1
RcHm_v2.0_Chr7g0237581 Rosa chinensis HOM05D007577 ORTHO05D002366 4.1e-32 142.1 214 55.1
Medtr5g065350 Medicago truncatula HOM05D007577 ORTHO05D002366 1.2e-31 140.6 181 46.4
MD15G1381100 Malus domestica HOM05D007577 ORTHO05D002366 1.5e-31 140.2 211 42.7
Actinidia10365 Actinidia chinensis HOM05D007577 ORTHO05D002366 2.6e-31 139.4 172 48.3
Psat0s2495g0040 Pisum sativum HOM05D007577 ORTHO05D002366 2.6e-31 139.4 186 54.8
arahy.Tifrunner.gnm1.ann1.MEQI9D Arachis hypogaea HOM05D007577 ORTHO05D002366 5.9e-31 138.3 201 56.7
LjContig00408g0001347 Lotus japonicus HOM05D007577 ORTHO05D002366 1.7e-30 136.7 201 42.8
MD08G1192700 Malus domestica HOM05D007577 ORTHO05D002366 1.7e-30 136.7 198 46.5
PGR042G1402 Punica granatum HOM05D007577 ORTHO05D002366 3.8e-30 135.6 206 41.7
Sed0009750 Sechium edule HOM05D007577 ORTHO05D002366 6.1e-28 128.3 165 47.3
TPR.G20891 Trifolium pratense HOM05D007577 ORTHO05D002366 1.0e-27 127.5 194 48.5
TAR625G1503 Trochodendron aralioides HOM05D007577 ORTHO05D002366 1.0e-27 127.5 164 46.3
CANSAT25G2895 Cannabis sativa HOM05D007577 ORTHO05D002366 1.8e-27 126.7 200 43.0
PGR031G3996 Punica granatum HOM05D007577 ORTHO05D002366 1.8e-27 126.7 166 46.4
TAR628G0666 Trochodendron aralioides HOM05D007577 ORTHO05D002366 1.8e-27 126.7 159 55.3
Sed0013944 Sechium edule HOM05D007577 ORTHO05D002366 2.3e-27 126.3 180 42.2
TWI56G0426 Tripterygium wilfordii HOM05D007577 ORTHO05D002366 2.3e-27 126.3 189 51.9
Ciclev10002010m.g Citrus clementina HOM05D007577 ORTHO05D002366 3.9e-27 125.6 230 44.8
Hund27003 Selenicereus undatus HOM05D007577 ORTHO05D002366 1.1e-26 124.0 199 54.8
CiPaw.07G168400 Carya illinoinensis HOM05D007577 ORTHO05D002366 5.7e-26 121.7 152 62.5
MBI06_g18795_MAGBIO Magnolia biondii HOM05D007577 ORTHO05D002366 9.7e-26 120.9 167 43.7
MELO3C011066.2 Cucumis melo HOM05D007577 ORTHO05D002366 2.2e-25 119.8 171 41.5
CsaV3_2G030080 Cucumis sativus L. HOM05D007577 ORTHO05D002366 2.8e-25 119.4 170 41.8
Sc23g0000570 Simmondsia chinensis HOM05D007577 ORTHO05D002366 8.2e-25 117.9 172 40.7
MSTRG.24626 Avicennia marina HOM05D007577 ORTHO05D002366 1.1e-24 117.5 169 44.4
Dinv44835 Davidia involucrata HOM05D007577 ORTHO05D002366 1.6e-23 113.6 123 65.0
Migut.N00361 Erythranthe guttata HOM05D007577 ORTHO05D002366 4.5e-23 112.1 168 45.2
Lsat_1_v5_gn_1_2280 Lactuca sativa HOM05D007577 ORTHO05D002366 1.7e-22 110.2 196 39.3
Nn5g29944 Nelumbo nucifera HOM05D007577 ORTHO05D002366 1.7e-22 110.2 177 40.1
SalBow3G1297 Salvia bowleyana HOM05D007577 ORTHO05D002366 8.5e-22 107.8 172 39.5
Nn1g05500 Nelumbo nucifera HOM05D007577 ORTHO05D002366 1.9e-21 106.7 155 41.3
Sc26g0000220 Simmondsia chinensis HOM05D007577 ORTHO05D002366 3.2e-21 105.9 165 38.2
Eucgr.F02125 Eucalyptus grandis HOM05D007577 ORTHO05D002366 5.5e-21 105.1 185 51.4
ECA247G1746 Erigeron canadensis HOM05D007577 ORTHO05D002366 1.6e-20 103.6 186 36.0
Prupe.1G527300 Prunus persica HOM05D007577 ORTHO05D002366 8.8e-19 97.8 179 40.2
HanXRQChr04g0108601 Helianthus annuus HOM05D007577 ORTHO05D002366 1.5e-18 97.1 166 38.6
ATR0022G018 Amborella trichopoda HOM05D007577 ORTHO05D002366 2.0e-18 96.7 167 38.3
Hma1.2p1_0620F.1_g190555 Hydrangea macrophylla HOM05D007577 ORTHO05D002366 1.7e-17 93.6 47 80.9
Aqoxy5G01332 Aquilegia oxysepala HOM05D007945 ORTHO05D010049 4.8e-17 92.0 70 55.7
Aqoxy6G01467 Aquilegia oxysepala HOM05D007577 ORTHO05D002366 9.1e-16 87.8 196 41.3
ClCG08G011490 Citrullus lanatus HOM05D007577 ORTHO05D002366 1.2e-15 87.4 148 39.9
PSO541G0756 Papaver somniferum HOM05D007577 ORTHO05D002366 2.7e-15 86.3 52 63.5
CSS0010517 Camellia sinensis var. sinensis HOM05D007577 ORTHO05D002366 1.7e-14 83.6 144 39.6
EL10Ac1g01102 Beta vulgaris HOM05D007577 ORTHO05D002366 1.5e-13 80.5 170 52.9
Oeu043942.1 Olea europaea HOM05D007577 ORTHO05D002366 1.5e-13 80.5 136 40.4
HPP92_016372 Vanilla planifolia HOM05D007577 ORTHO05D002366 1.5e-13 80.5 53 60.4
Zm00001eb401520 Zea mays HOM05D007577 ORTHO05D002366 1.6e-12 77.0 159 32.7
Os04g0450000 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 4.7e-12 75.5 45 62.2
PSO675G7602 Papaver somniferum HOM05D007577 ORTHO05D002366 4.7e-12 75.5 52 59.6
Os03g0187400 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 6.1e-12 75.1 51 60.8
Zm00001eb081390 Zea mays HOM05D007577 ORTHO05D002366 1.4e-11 73.9 47 59.6
SEGI_40577 Sequoiadendron giganteum HOM05D007577 ORTHO05D002366 4.0e-11 72.4 178 30.3
SMO364G0458 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 5.2e-11 72.0 50 62.0
HPP92_002220 Vanilla planifolia HOM05D007577 ORTHO05D002366 5.2e-11 72.0 175 33.7
SMO274G0065 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 6.8e-11 71.6 50 56.0
Zm00001eb244610 Zea mays HOM05D007577 ORTHO05D002366 8.8e-11 71.2 58 53.4
Os02g0568600 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 1.2e-10 70.9 47 57.4
Zm00001eb006590 Zea mays HOM05D007577 ORTHO05D002366 1.5e-10 70.5 43 62.8
Zm00001eb423710 Zea mays HOM05D003505 ORTHO05D002366 1.3e-09 67.4 47 55.3
Zm00001eb244620 Zea mays HOM05D007577 ORTHO05D002366 1.7e-09 67.0 43 62.8
TWI23G0353 Tripterygium wilfordii HOM05D003505 ORTHO05D002366 4.9e-09 65.5 52 51.9
SEGI_11478 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 6.3e-09 65.1 46 58.7
DCAR_025091 Daucus carota HOM05D003505 ORTHO05D002366 1.1e-08 64.3 52 50.0
ATR0006G064 Amborella trichopoda HOM05D003505 ORTHO05D019556 1.4e-08 63.9 57 45.6
DCAR_025090 Daucus carota HOM05D003505 ORTHO05D002366 4.1e-08 62.4 52 48.1
Lalb_Chr03g0039921 Lupinus albus HOM05D003505 ORTHO05D002366 4.1e-08 62.4 51 45.1
Ca_07813_v3 Cicer arietinum L. HOM05D003505 ORTHO05D002366 5.4e-08 62.0 52 44.2
SEGI_16387 Sequoiadendron giganteum HOM05D020288 ORTHO05D019556 5.4e-08 62.0 61 42.6
Actinidia30808 Actinidia chinensis HOM05D007577 ORTHO05D002366 7.0e-08 61.6 64 57.8
Psat4g208960 Pisum sativum HOM05D003505 ORTHO05D002366 7.0e-08 61.6 51 45.1
SEGI_07305 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 7.0e-08 61.6 63 39.7
Medtr8g005880 Medicago truncatula HOM05D003505 ORTHO05D002366 9.1e-08 61.2 51 43.1
Nn1g00971 Nelumbo nucifera HOM05D003505 ORTHO05D002366 9.1e-08 61.2 66 39.4
Gohir.D12G098400 Gossypium hirsutum HOM05D003505 ORTHO05D002366 1.2e-07 60.8 56 42.9
Gorai.008G107200 Gossypium raimondii HOM05D003505 ORTHO05D002366 1.2e-07 60.8 56 42.9
Os04g0551600 Oryza sativa ssp. japonica HOM05D003505 ORTHO05D002366 1.2e-07 60.8 50 50.0
Psat4g209000 Pisum sativum HOM05D003505 ORTHO05D002366 1.2e-07 60.8 51 47.1
QL04p035739 Quercus lobata HOM05D003505 ORTHO05D002366 1.2e-07 60.8 56 42.9
CDE02G0489 Ceratophyllum demersum HOM05D000159 ORTHO05D000148 1.6e-07 60.5 52 46.2
Sc02g0002860 Simmondsia chinensis HOM05D003505 ORTHO05D002366 1.6e-07 60.5 53 47.2
CDE05G1434 Ceratophyllum demersum HOM05D020288 ORTHO05D019556 2.0e-07 60.1 50 52.0
BraA09t42276Z Brassica rapa HOM05D003505 ORTHO05D002366 3.5e-07 59.3 56 46.4
ATR0317G107 Amborella trichopoda HOM05D003505 ORTHO05D002366 4.5e-07 58.9 48 50.0
SEGI_29775 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 4.5e-07 58.9 57 43.9
PGR042G1548 Punica granatum HOM05D003505 ORTHO05D002366 5.9e-07 58.5 55 49.1
HPP92_027433 Vanilla planifolia HOM05D003505 ORTHO05D002366 5.9e-07 58.5 53 45.3
HanXRQChr16g0519671 Helianthus annuus HOM05D003505 ORTHO05D002366 7.7e-07 58.2 45 51.1
Oeu009617.1 Olea europaea HOM05D003505 ORTHO05D002366 7.7e-07 58.2 53 43.4
Oeu009618.1 Olea europaea HOM05D003505 ORTHO05D002366 7.7e-07 58.2 53 43.4
Oeu051914.1 Olea europaea HOM05D003505 ORTHO05D002366 7.7e-07 58.2 53 43.4
GSVIVG01018208001 Vitis vinifera HOM05D003505 ORTHO05D002366 7.7e-07 58.2 52 44.2
CDE04G0168 Ceratophyllum demersum HOM05D020288 ORTHO05D002366 1.0e-06 57.8 69 33.3
TPR.G28736 Trifolium pratense HOM05D003505 ORTHO05D002366 1.0e-06 57.8 52 46.2
Aa31LG1G11400 Aethionema arabicum HOM05D003505 ORTHO05D002366 1.3e-06 57.4 59 44.1
BcaNung05014 Brassica carinata HOM05D003505 ORTHO05D002366 1.7e-06 57.0 56 46.4
C08p54050 Brassica napus HOM05D003505 ORTHO05D002366 1.7e-06 57.0 56 46.4
BolC8t52915H Brassica oleracea HOM05D003505 ORTHO05D002366 1.7e-06 57.0 56 46.4
Carub.0001s0016 Capsella rubella HOM05D003505 ORTHO05D002366 1.7e-06 57.0 45 51.1
SEGI_38843 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 1.7e-06 57.0 55 45.5
BcaC07g42343 Brassica carinata HOM05D003505 ORTHO05D002366 2.3e-06 56.6 53 47.2
AT1G02070 Arabidopsis thaliana HOM05D003505 ORTHO05D002366 2.9e-06 56.2 56 46.4
EL10Ac1g00817 Beta vulgaris HOM05D003505 ORTHO05D002366 2.9e-06 56.2 64 39.1
CARHR000260 Cardamine hirsuta HOM05D003505 ORTHO05D002366 2.9e-06 56.2 45 51.1
vmacro13460 Vaccinium macrocarpon HOM05D003505 ORTHO05D002366 2.9e-06 56.2 57 43.9
SEGI_22776 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 3.8e-06 55.8 55 45.5
HanXRQChr13g0422861 Helianthus annuus HOM05D003505 ORTHO05D002366 5.0e-06 55.5 45 51.1
Migut.N01762 Erythranthe guttata HOM05D003505 ORTHO05D002366 6.6e-06 55.1 48 47.9
SEGI_19925 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 6.6e-06 55.1 55 45.5
AL1G10180 Arabidopsis lyrata HOM05D003505 ORTHO05D002366 8.6e-06 54.7 43 53.5


User provided reference genes

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