Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 3.0e-168 595.1 304 100.0
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.7e-139 499.6 305 85.2
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 3.8e-139 498.4 308 85.4
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.2e-138 495.4 308 85.7
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.7e-134 481.9 308 83.8
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 1.2e-129 466.8 294 82.3
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.7e-113 412.5 233 88.0
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 6.8e-112 407.9 307 68.7
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 6.8e-112 407.9 307 68.7
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 4.4e-111 405.2 302 69.9
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 3.7e-110 402.1 309 70.2
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 1.4e-109 400.2 292 71.2
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 2.7e-108 396.0 300 69.0
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 4.5e-108 395.2 303 68.0
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 1.0e-107 394.0 284 69.7
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.0e-107 394.0 301 67.8
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 2.3e-107 392.9 300 68.3
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 2.9e-107 392.5 308 67.2
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 3.8e-107 392.1 303 67.7
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.5e-106 390.2 279 71.0
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 9.5e-106 387.5 278 70.5
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 1.2e-105 387.1 301 66.1
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 1.6e-105 386.7 303 68.0
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.6e-105 385.6 284 70.1
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 6.1e-105 384.8 254 76.0
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 6.1e-105 384.8 306 66.3
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 6.1e-105 384.8 303 68.6
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 1.4e-104 383.6 301 66.8
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 4.0e-104 382.1 305 67.2
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 2.6e-103 379.4 252 74.6
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 1.3e-102 377.1 310 64.5
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 3.7e-102 375.6 301 66.8
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.1e-101 374.0 309 64.1
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 3.2e-101 372.5 292 67.5
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 2.0e-100 369.8 271 69.0
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 2.0e-100 369.8 280 66.4
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 2.7e-100 369.4 298 63.4
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 3.5e-100 369.0 271 67.9
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 4.5e-100 368.6 308 64.6
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 5.9e-100 368.2 308 63.0
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.0e-99 367.5 294 65.0
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.0e-99 367.5 302 65.9
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.3e-99 367.1 300 64.3
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 2.9e-99 365.9 303 65.3
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 8.6e-99 364.4 304 65.1
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 1.9e-98 363.2 299 64.9
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 3.3e-98 362.5 308 63.6
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 5.6e-98 361.7 297 64.0
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 7.3e-98 361.3 239 75.7
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 9.5e-98 360.9 290 67.2
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 9.5e-98 360.9 293 67.2
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 2.8e-97 359.4 311 62.1
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 3.6e-97 359.0 301 63.1
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 3.6e-97 359.0 311 62.1
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 6.1e-97 358.2 295 62.7
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 8.0e-97 357.8 240 72.9
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.1e-96 355.9 301 61.8
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 5.2e-96 355.1 295 62.4
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 6.8e-96 354.8 258 67.4
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.5e-95 353.6 293 64.8
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 1.5e-95 353.6 253 67.6
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 2.6e-95 352.8 308 61.4
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 3.4e-95 352.4 292 60.3
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 9.8e-95 350.9 300 60.7
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.3e-94 350.5 301 62.8
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.7e-94 350.1 258 68.6
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.2e-94 349.7 300 62.3
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 3.7e-94 349.0 233 70.4
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 1.1e-93 347.4 277 64.6
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 1.9e-93 346.7 300 61.0
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 3.2e-93 345.9 299 63.2
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 5.4e-93 345.1 248 69.0
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.6e-92 343.6 293 62.1
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 2.0e-92 343.2 274 67.5
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 3.5e-92 342.4 308 61.0
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 7.8e-92 341.3 310 58.1
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 3.9e-91 339.0 284 64.8
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 2.5e-90 336.3 230 72.6
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 3.3e-90 335.9 248 66.5
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 7.3e-90 334.7 345 53.0
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 9.5e-90 334.3 261 63.6
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 2.1e-89 333.2 255 66.7
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 3.6e-89 332.4 261 63.6
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 8.0e-89 331.3 253 64.4
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 1.1e-88 330.9 261 63.6
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 3.1e-88 329.3 304 59.9
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.7e-86 323.6 308 58.4
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.7e-86 323.6 377 51.7
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.9e-86 322.0 333 52.9
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 8.3e-86 321.2 256 61.7
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 1.9e-85 320.1 294 55.4
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 9.2e-85 317.8 258 61.6
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 1.6e-81 307.0 418 44.7
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 5.2e-80 302.0 229 62.4
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 2.9e-78 296.2 190 75.8
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 7.1e-77 291.6 233 63.1
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 3.0e-75 286.2 197 71.1
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 3.6e-73 279.3 319 50.8
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 8.9e-72 274.6 195 71.3
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 5.8e-71 271.9 203 66.5
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 1.7e-70 270.4 299 47.5
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 2.9e-70 269.6 246 54.9
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 4.9e-70 268.9 258 54.7
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 2.7e-68 263.1 193 65.8
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 1.9e-66 256.9 211 60.7
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 2.5e-66 256.5 250 55.2
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 5.3e-64 248.8 298 50.3
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.2e-61 239.6 269 49.4
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.6e-60 237.3 235 51.5
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 2.1e-57 226.9 279 42.7
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 5.3e-56 222.2 175 62.9
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.1e-53 214.5 252 46.0
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.9e-53 213.8 223 57.0
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 1.8e-51 207.2 144 73.6
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.5e-50 203.4 201 55.2
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 2.5e-50 203.4 270 43.0
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 1.7e-46 190.7 142 65.5
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 6.5e-46 188.7 251 43.4
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 5.8e-39 165.6 120 67.5
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 7.4e-34 148.7 201 41.3
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.2e-28 131.3 163 45.4
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 2.5e-26 123.6 79 73.4
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 2.3e-19 100.5 77 61.0
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 2.7e-07 60.5 42 71.4


User provided reference genes

Program Settings