Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 7.8e-208 726.9 361 100.0
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.9e-190 669.1 362 91.4
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 9.6e-190 666.8 362 92.0
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.2e-187 659.8 363 89.8
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 2.9e-186 655.2 364 89.6
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.1e-184 649.0 363 88.7
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.3e-166 588.6 361 81.4
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.3e-165 586.6 361 78.4
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 2.8e-165 585.5 364 81.6
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 3.7e-165 585.1 370 79.7
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 6.3e-165 584.3 367 79.6
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.1e-164 583.6 311 89.1
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.1e-164 582.0 369 80.2
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 5.3e-164 581.3 368 78.8
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 5.3e-164 581.3 368 77.4
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 1.2e-163 580.1 370 78.9
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 2.0e-163 579.3 371 77.6
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 2.0e-163 579.3 361 78.4
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 3.4e-163 578.6 353 81.0
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 4.5e-163 578.2 370 78.1
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 5.9e-163 577.8 308 89.6
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.7e-162 576.2 364 78.6
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.7e-162 576.2 361 77.3
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.9e-162 575.5 364 78.3
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 6.5e-162 574.3 367 78.5
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 8.5e-162 573.9 362 77.6
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.4e-161 573.2 355 80.0
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.4e-161 573.2 362 78.2
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 7.2e-161 570.9 368 78.0
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.7e-160 568.9 327 83.8
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.6e-160 568.2 361 76.2
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 7.9e-160 567.4 362 76.8
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.0e-159 567.0 362 76.8
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.4e-159 566.6 363 76.9
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 2.3e-159 565.8 363 75.8
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 6.7e-159 564.3 370 75.9
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 8.8e-159 563.9 365 75.9
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 8.8e-159 563.9 363 76.9
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 2.0e-158 562.8 333 81.7
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.5e-158 562.4 363 76.0
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.3e-158 562.0 365 75.6
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 4.3e-158 561.6 370 75.1
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 4.3e-158 561.6 362 76.0
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 4.3e-158 561.6 365 78.1
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 7.4e-158 560.8 384 74.0
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 7.4e-158 560.8 387 73.6
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.3e-157 560.1 365 76.7
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.3e-157 560.1 322 83.2
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 4.8e-157 558.1 363 75.5
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.3e-157 557.8 364 75.8
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.2e-157 557.4 363 75.5
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 8.2e-157 557.4 366 75.7
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 5.3e-156 554.7 353 79.3
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.9e-156 554.3 339 79.6
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 2.0e-155 552.7 363 74.9
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 3.4e-155 552.0 366 74.0
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 3.4e-155 552.0 363 73.8
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 4.5e-155 551.6 367 73.3
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 5.9e-155 551.2 366 75.4
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 5.9e-155 551.2 367 72.8
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 7.7e-155 550.8 374 74.6
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.0e-154 550.4 362 75.7
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.3e-154 550.1 377 74.3
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.7e-154 549.7 373 75.3
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 2.2e-154 549.3 365 75.1
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.9e-154 548.9 367 75.2
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 2.9e-154 548.9 363 74.9
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 3.8e-154 548.5 370 75.1
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 5.0e-154 548.1 366 74.9
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 5.0e-154 548.1 362 72.4
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 6.5e-154 547.7 368 75.0
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 8.5e-154 547.4 360 75.6
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 8.5e-154 547.4 358 75.4
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 4.2e-153 545.0 366 74.9
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 5.5e-153 544.7 366 72.4
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 7.2e-153 544.3 368 75.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 9.4e-153 543.9 366 73.0
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 9.4e-153 543.9 339 79.9
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.2e-152 543.5 361 72.3
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-152 543.1 366 74.3
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.6e-152 543.1 366 74.3
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 1.6e-152 543.1 365 74.8
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.1e-152 542.7 362 74.9
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.7e-152 542.3 369 75.3
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.7e-152 542.3 367 74.7
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 6.1e-152 541.2 365 74.5
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 7.9e-152 540.8 308 82.8
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.0e-151 540.4 362 76.5
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 3.9e-151 538.5 371 73.6
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 6.7e-151 537.7 367 74.7
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 6.7e-151 537.7 364 72.5
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 8.8e-151 537.3 362 71.3
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.1e-150 537.0 384 70.1
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.6e-150 535.8 362 72.9
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 4.4e-150 535.0 361 72.0
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 9.1e-148 527.3 328 81.7
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 9.1e-148 527.3 372 69.6
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.2e-147 526.9 363 70.5
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.5e-145 520.0 363 70.0
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.4e-143 513.5 360 71.9
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 2.3e-143 512.7 333 74.5
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 8.8e-143 510.8 480 57.9
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 9.7e-142 507.3 387 69.3
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.4e-140 503.4 322 77.0
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.6e-139 500.0 312 75.3
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 4.5e-139 498.4 386 67.4
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 2.2e-138 496.1 362 69.9
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.1e-137 493.8 301 76.1
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.0e-134 483.0 325 75.4
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 3.5e-131 472.2 336 72.9
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 3.2e-129 465.7 323 71.8
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.7e-125 453.4 277 79.1
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 6.8e-119 431.4 367 65.7
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 8.9e-119 431.0 281 70.8
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-117 427.2 339 69.3
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 9.2e-116 421.0 282 69.9
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.3e-114 416.4 244 80.3
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 4.3e-113 412.1 281 73.7
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 3.6e-112 409.1 313 65.2
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.2e-107 394.0 254 78.3
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 3.5e-107 392.5 285 66.3
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.5e-105 386.3 257 75.9
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 3.7e-101 372.5 313 58.5
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 6.6e-98 361.7 290 60.7
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 5.2e-95 352.1 329 62.0
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 1.5e-94 350.5 280 60.4
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.6e-91 340.5 294 56.8
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.3e-82 310.1 168 88.1
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 2.3e-82 310.1 288 55.9
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.3e-77 294.3 159 85.5
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.5e-65 254.2 229 56.8
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 2.1e-59 233.8 127 84.3
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.3e-57 226.5 325 46.2
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.3e-57 226.1 127 80.3
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 3.8e-53 213.0 146 70.5
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-48 196.8 146 67.1
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-45 188.3 146 65.8
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.0e-42 176.8 100 79.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.8e-40 169.5 147 54.4
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 2.2e-37 160.6 146 56.8
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.6e-35 154.5 108 66.7
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.1e-31 140.2 72 91.7
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 4.2e-20 103.2 115 48.7
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 7.2e-20 102.4 64 78.1
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 2.1e-19 100.9 67 68.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 2.1e-19 100.9 67 68.7
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 2.7e-19 100.5 88 56.8
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.2e-14 85.1 44 84.1
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 2.9e-13 80.5 44 81.8
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 5.0e-13 79.7 43 83.7
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 2.5e-12 77.4 35 94.3
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.6e-11 74.7 41 75.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.0e-10 70.5 40 85.0
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 2.0e-09 67.8 94 52.1
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 2.8e-08 63.9 58 56.9
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 7.8e-06 55.8 116 27.6


User provided reference genes

Program Settings