Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib093G0747 Durio zibethinus HOM05D008012 ORTHO05D010154 3.5e-149 531.9 340 100.0
Gohir.D05G222500 Gossypium hirsutum HOM05D008012 ORTHO05D010154 1.7e-63 247.3 337 53.4
Gorai.009G229900 Gossypium raimondii HOM05D008012 ORTHO05D010154 2.2e-63 246.9 351 51.3
Gohir.A05G219900 Gossypium hirsutum HOM05D008012 ORTHO05D010154 2.6e-56 223.4 355 51.5
COL.COLO4_35233 Corchorus olitorius HOM05D008012 ORTHO05D010154 1.0e-55 221.5 340 47.4
Thecc.08G070000 Theobroma cacao HOM05D008012 ORTHO05D010154 6.3e-50 202.2 484 37.4
CiPaw.07G166200 Carya illinoinensis HOM05D008012 ORTHO05D010154 8.0e-37 158.7 347 36.6
Cfa013683 Carpinus fangiana HOM05D008012 ORTHO05D010154 8.8e-36 155.2 386 33.9
Atru.chr13.1021 Acer truncatum HOM05D008012 ORTHO05D010154 1.1e-33 148.3 170 49.4
TAR628G1418 Trochodendron aralioides HOM05D008012 ORTHO05D010154 1.2e-32 144.8 358 33.2
Dinv44854 Davidia involucrata HOM05D008012 ORTHO05D010154 7.7e-32 142.1 338 34.0
Dinv42620 Davidia involucrata HOM05D008012 ORTHO05D010154 2.9e-31 140.2 145 52.4
GSVIVG01009167001 Vitis vinifera HOM05D008012 ORTHO05D010154 5.0e-31 139.4 143 55.2
Ciclev10002397m.g Citrus clementina HOM05D008012 ORTHO05D010154 7.2e-30 135.6 321 33.0
Prupe.1G530900 Prunus persica HOM05D008012 ORTHO05D010154 1.2e-29 134.8 151 51.7
Cpa.g.sc21.9 Carica papaya HOM05D008012 ORTHO05D010154 6.1e-29 132.5 170 45.9
RcHm_v2.0_Chr7g0236831 Rosa chinensis HOM05D008012 ORTHO05D010154 2.3e-28 130.6 162 47.5
CSS0008352 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 5.2e-28 129.4 335 32.8
MBI02_g32605_MAGBIO Magnolia biondii HOM05D008012 ORTHO05D010154 1.2e-27 128.3 308 34.1
Rhsim06G0072100 Rhododendron simsii HOM05D008012 ORTHO05D010154 2.6e-27 127.1 118 53.4
Lj1g0025426 Lotus japonicus HOM05D008012 ORTHO05D010154 2.9e-26 123.6 141 49.6
vmacro21334 Vaccinium macrocarpon HOM05D008012 ORTHO05D010154 1.4e-25 121.3 128 53.1
PGR031G3518 Punica granatum HOM05D052328 ORTHO05D010154 1.8e-25 120.9 365 31.0
QL09p017632 Quercus lobata HOM05D008012 ORTHO05D010154 1.8e-25 120.9 145 46.9
Eucgr.F02139 Eucalyptus grandis HOM05D008012 ORTHO05D010154 4.1e-25 119.8 122 49.2
Hma1.2p1_0125F.1_g058940 Hydrangea macrophylla HOM05D008012 ORTHO05D010154 7.0e-25 119.0 135 48.9
Aqoxy5G01307 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 9.2e-25 118.6 142 43.0
Lalb_Chr23g0270051 Lupinus albus HOM05D008012 ORTHO05D010154 1.3e-23 114.8 130 48.5
Glyma.06G093300 Glycine max HOM05D008012 ORTHO05D010154 2.3e-23 114.0 122 50.8
Manes.18G059880 Manihot esculenta HOM05D008012 ORTHO05D010154 3.0e-23 113.6 194 39.7
CANSAT25G2577 Cannabis sativa HOM05D008012 ORTHO05D010154 3.9e-23 113.2 125 48.0
Lalb_Chr11g0065041 Lupinus albus HOM05D008012 ORTHO05D010154 1.1e-22 111.7 165 42.4
Hund16860 Selenicereus undatus HOM05D008012 ORTHO05D010154 2.5e-22 110.5 171 40.4
Glyma.04G091500 Glycine max HOM05D008012 ORTHO05D010154 4.3e-22 109.8 160 41.9
TWI56G1079 Tripterygium wilfordii HOM05D008012 ORTHO05D010154 5.6e-22 109.4 203 39.4
Phvul.009G144400 Phaseolus vulgaris HOM05D008012 ORTHO05D010154 7.3e-22 109.0 318 30.8
EL10Ac1g01062 Beta vulgaris HOM05D008012 ORTHO05D010154 9.5e-22 108.6 164 39.0
VMungo1309G2208 Vigna mungo HOM05D008012 ORTHO05D010154 1.2e-21 108.2 114 46.5
Nn5g29899 Nelumbo nucifera HOM05D008012 ORTHO05D010154 6.2e-21 105.9 342 31.3
CDE04G1170 Ceratophyllum demersum HOM05D008012 ORTHO05D010154 8.0e-21 105.5 141 37.6
Sc23g0000670 Simmondsia chinensis HOM05D008012 ORTHO05D010154 1.0e-20 105.1 161 38.5
Lsat_1_v5_gn_9_75360 Lactuca sativa HOM05D008012 ORTHO05D010154 2.3e-20 104.0 99 52.5
HanXRQChr12g0378041 Helianthus annuus HOM05D008012 ORTHO05D010154 5.2e-20 102.8 129 48.1
AUR62019041 Chenopodium quinoa HOM05D008012 ORTHO05D010154 5.8e-19 99.4 186 32.8
Aqoxy6G01439 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 1.3e-18 98.2 130 40.0
FAN04G0544 Fragaria x ananassa HOM05D008012 ORTHO05D010154 1.7e-18 97.8 144 41.0
HanXRQChr12g0378051 Helianthus annuus HOM05D008012 ORTHO05D010154 2.9e-18 97.1 179 35.8
TPR.G26063 Trifolium pratense HOM05D008012 ORTHO05D010154 3.7e-18 96.7 105 45.7
FvH4_5g35450 Fragaria vesca HOM05D008012 ORTHO05D010154 4.9e-18 96.3 143 41.3
FAN08G2109 Fragaria x ananassa HOM05D008012 ORTHO05D010154 4.9e-18 96.3 143 41.3
FAN18G1410 Fragaria x ananassa HOM05D008012 ORTHO05D010154 8.3e-18 95.5 143 41.3
Actinidia10381 Actinidia chinensis HOM05D000160 ORTHO05D001344 1.9e-17 94.4 81 54.3
Ca_15998_v3 Cicer arietinum L. HOM05D008012 ORTHO05D010154 1.9e-17 94.4 110 42.7
PSO017G0519 Papaver somniferum HOM05D008012 ORTHO05D010154 5.4e-17 92.8 348 28.7
Psat5g046360 Pisum sativum HOM05D008012 ORTHO05D010154 2.0e-16 90.9 119 43.7
arahy.Tifrunner.gnm1.ann1.S7389H Arachis hypogaea HOM05D008012 ORTHO05D010154 2.7e-16 90.5 133 39.8
CAN.G1215.11 Capsicum annuum HOM05D008012 ORTHO05D010154 2.7e-16 90.5 121 43.0
Medtr3g100460 Medicago truncatula HOM05D008012 ORTHO05D010154 4.6e-16 89.7 93 43.0
Zm00001eb038310 Zea mays HOM05D008012 ORTHO05D010154 3.0e-15 87.0 84 47.6
ATR0665G245 Amborella trichopoda HOM05D008012 ORTHO05D010154 8.6e-15 85.5 135 39.3
ECA232G0711 Erigeron canadensis HOM05D008012 ORTHO05D010154 8.6e-15 85.5 185 35.7
Potri.005G156500 Populus trichocarpa HOM05D008012 ORTHO05D010154 5.6e-14 82.8 349 34.4
CSS0015058 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 9.5e-14 82.0 73 53.4
COL.COLO4_22690 Corchorus olitorius HOM05D008012 ORTHO05D010154 1.5e-11 74.7 64 59.4
Sabra05G0120100 Salix brachista HOM05D008012 ORTHO05D010154 4.4e-11 73.2 349 29.8
Os08g0477800 Oryza sativa ssp. japonica HOM05D008012 ORTHO05D010154 9.8e-11 72.0 131 35.9
Gohir.D09G043600 Gossypium hirsutum HOM05D002290 ORTHO05D002532 3.7e-10 70.1 57 61.4
Gorai.009G396100 Gossypium raimondii HOM05D008012 ORTHO05D036253 3.7e-10 70.1 60 60.0
Gorai.012G082100 Gossypium raimondii HOM05D008012 ORTHO05D036253 7.1e-09 65.9 60 56.7
SEGI_09514 Sequoiadendron giganteum HOM05D008012 ORTHO05D010154 1.2e-08 65.1 86 34.9
Gohir.D01G140801 Gossypium hirsutum HOM05D008012 ORTHO05D036253 2.1e-08 64.3 60 55.0
CSS0023045 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 1.3e-07 61.6 72 44.4
Pp3c1_4500 Physcomitrium patens HOM05D008196 ORTHO05D010261 3.0e-07 60.5 178 23.6
SMO367G1035 Selaginella moellendorffii HOM05D008196 ORTHO05D010261 3.0e-07 60.5 150 28.0
Pp3c2_36970 Physcomitrium patens HOM05D008196 ORTHO05D010261 5.1e-07 59.7 180 26.1
Pp3c2_36980 Physcomitrium patens HOM05D008196 ORTHO05D010261 5.1e-07 59.7 180 26.1
Rhsim08G0053500 Rhododendron simsii HOM05D000855 ORTHO05D001716 5.1e-07 59.7 110 30.0
arahy.Tifrunner.gnm1.ann1.XWH5X4 Arachis hypogaea HOM05D008012 ORTHO05D010154 6.6e-07 59.3 119 35.3
Cfa016460 Carpinus fangiana HOM05D008196 ORTHO05D010261 1.1e-06 58.5 84 31.0
unitig_578.g16517 Utricularia gibba HOM05D000590 ORTHO05D005739 3.3e-06 57.0 72 41.7
Atru.chr8.1725_Atru.chr8.1735 Acer truncatum HOM05D008196 ORTHO05D010261 4.3e-06 56.6 120 29.2
Migut.N00443 Erythranthe guttata HOM05D000590 ORTHO05D005739 4.3e-06 56.6 77 37.7
A04p24160 Brassica napus HOM05D000590 ORTHO05D005739 5.6e-06 56.2 85 30.6
BraA04t17936Z Brassica rapa HOM05D000590 ORTHO05D005739 5.6e-06 56.2 85 30.6
CDE06G1684 Ceratophyllum demersum HOM05D008196 ORTHO05D010261 9.5e-06 55.5 108 27.8
HPP92_005977 Vanilla planifolia HOM05D061362 ORTHO05D010154 9.5e-06 55.5 151 28.5


User provided reference genes

Program Settings