Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 5.2e-81 304.3 149 100.0
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 4.2e-67 258.1 146 84.9
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 7.2e-67 257.3 146 84.9
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 7.8e-61 237.3 150 81.3
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.0e-60 236.9 147 78.9
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.5e-59 233.0 147 78.2
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.5e-59 233.0 147 78.2
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.2e-58 229.9 149 72.5
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.1e-58 229.2 149 73.2
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.8e-57 226.1 149 71.1
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.6e-53 213.0 150 73.3
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.7e-53 212.2 150 73.3
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.6e-53 211.5 150 72.7
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 1.7e-44 183.0 148 61.5
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 4.3e-43 178.3 144 62.5
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 3.6e-42 175.3 149 58.4
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 3.1e-41 172.2 150 58.0
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 6.8e-41 171.0 146 61.0
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.2e-40 170.2 153 61.4
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.9e-38 162.9 146 55.5
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 5.4e-38 161.4 148 58.8
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.1e-37 159.5 152 56.6
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 2.3e-36 156.0 136 58.1
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.3e-36 156.0 140 54.3
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 2.3e-36 156.0 147 52.4
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.0e-36 155.6 140 54.3
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.0e-36 155.6 147 53.7
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.9e-36 155.2 148 54.1
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 3.9e-36 155.2 148 54.1
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 3.9e-36 155.2 147 51.7
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 5.1e-36 154.8 152 55.3
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 8.6e-36 154.1 148 54.7
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.1e-35 153.7 139 56.1
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 1.9e-35 152.9 149 54.4
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.3e-35 152.1 142 57.7
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 3.3e-35 152.1 147 51.0
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 5.6e-35 151.4 137 53.3
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 2.1e-34 149.4 148 52.7
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 3.6e-34 148.7 146 51.4
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 4.7e-34 148.3 149 51.7
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 6.2e-34 147.9 152 51.3
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 6.2e-34 147.9 118 61.0
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.4e-33 146.0 133 56.4
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 3.1e-33 145.6 138 55.8
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 5.2e-33 144.8 134 54.5
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 6.8e-33 144.4 143 54.5
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.0e-32 142.9 138 52.9
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 2.6e-32 142.5 147 53.1
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.4e-32 142.1 155 47.1
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 5.8e-32 141.4 138 51.4
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 9.9e-32 140.6 156 53.8
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 1.3e-31 140.2 117 60.7
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 2.9e-31 139.0 148 50.0
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 4.9e-31 138.3 142 50.7
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 4.9e-31 138.3 147 51.7
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 6.4e-31 137.9 147 49.0
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 8.4e-31 137.5 146 50.0
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 1.9e-30 136.3 150 49.3
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.9e-30 136.3 150 50.7
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 4.1e-30 135.2 146 52.1
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 7.1e-30 134.4 142 49.3
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 9.2e-30 134.0 152 50.7
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 2.1e-29 132.9 146 48.6
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 2.7e-29 132.5 155 48.4
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.7e-29 132.5 152 49.3
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 2.7e-29 132.5 147 47.6
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 3.5e-29 132.1 139 54.0
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 3.5e-29 132.1 145 48.3
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 3.0e-28 129.0 140 50.7
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 3.0e-28 129.0 164 47.6
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 3.0e-28 129.0 155 50.3
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 3.9e-28 128.6 145 51.0
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 5.1e-28 128.3 156 45.5
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 6.6e-28 127.9 152 49.3
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 6.6e-28 127.9 152 49.3
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.1e-27 127.1 151 45.0
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.5e-27 126.7 151 47.7
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.5e-27 126.7 151 47.7
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.9e-27 126.3 142 49.3
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 5.6e-27 124.8 151 47.0
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 5.6e-27 124.8 138 50.0
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.7e-26 121.7 150 45.3
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 1.1e-25 120.6 148 46.6
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 1.1e-25 120.6 150 46.7
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.8e-25 119.8 150 42.7
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.8e-25 119.8 150 42.7
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 2.4e-25 119.4 121 54.5
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 5.2e-25 118.2 118 52.5
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 6.9e-25 117.9 145 44.1
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 9.0e-25 117.5 149 44.3
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.2e-24 117.1 156 44.9
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 1.5e-24 116.7 135 46.7
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.6e-24 115.9 116 57.8
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 4.4e-24 115.2 145 44.1
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.8e-24 114.8 142 45.1
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.8e-24 114.8 143 44.8
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.7e-23 113.2 134 47.8
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.2e-23 112.8 148 43.9
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 2.9e-23 112.5 135 45.2
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 8.4e-23 110.9 143 46.2
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 1.9e-22 109.8 150 44.0
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 2.4e-22 109.4 148 43.9
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 3.2e-22 109.0 135 47.4
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 4.2e-22 108.6 136 44.9
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 1.6e-21 106.7 104 54.8
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 2.7e-21 105.9 140 44.3
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 3.5e-21 105.5 135 45.9
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 6.0e-21 104.8 138 45.7
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 6.0e-21 104.8 135 43.0
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.0e-20 104.0 154 41.6
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 1.3e-20 103.6 135 43.0
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 5.1e-20 101.7 135 41.5
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 5.1e-20 101.7 135 41.5
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 6.6e-20 101.3 135 41.5
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 6.6e-20 101.3 139 44.6
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 8.7e-20 100.9 146 39.7
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 1.1e-19 100.5 139 41.0
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 1.5e-19 100.1 118 48.3
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 2.5e-19 99.4 137 42.3
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 3.3e-19 99.0 139 40.3
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 1.3e-18 97.1 148 40.5
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.3e-18 97.1 104 51.0
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 1.3e-18 97.1 137 40.1
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 6.2e-18 94.7 138 39.1
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 1.1e-17 94.0 103 53.4
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 1.1e-17 94.0 103 53.4
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 1.8e-17 93.2 136 41.2
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 1.8e-17 93.2 140 39.3
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.1e-17 92.4 139 40.3
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 5.3e-17 91.7 135 45.9
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 9.0e-17 90.9 77 63.6
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.2e-16 90.5 151 39.7
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.2e-16 90.5 136 38.2
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.0e-16 89.7 143 37.1
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 3.4e-16 89.0 104 51.0
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 4.5e-16 88.6 134 39.6
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.6e-16 87.8 149 38.9
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.2e-15 86.3 104 49.0
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 2.2e-15 86.3 118 42.4
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.9e-15 85.9 138 35.5
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.9e-15 85.9 137 41.6
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.9e-15 85.1 145 35.2
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 8.4e-15 84.3 140 37.1
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.1e-14 84.0 146 36.3
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.4e-14 82.8 134 33.6
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 3.2e-14 82.4 134 36.6
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 3.2e-14 82.4 132 38.6
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.2e-14 82.0 87 49.4
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 4.2e-14 82.0 110 45.5
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.2e-14 82.0 137 32.8
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 5.4e-14 81.6 119 43.7
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 1.2e-13 80.5 135 41.5
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.1e-13 79.7 137 32.1
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 2.1e-13 79.7 135 39.3
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 6.0e-13 78.2 97 46.4
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.3e-12 77.0 149 30.2
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.3e-12 77.0 140 32.1
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.0e-12 75.9 145 33.1
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 3.9e-12 75.5 138 34.1
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 6.7e-12 74.7 60 63.3
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.9e-11 73.2 49 71.4
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.8e-10 68.6 137 32.1
Sc26g0003380 Simmondsia chinensis HOM05D004108 ORTHO05D004849 6.2e-10 68.2 79 54.4
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 3.1e-09 65.9 106 41.5
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 3.1e-09 65.9 125 35.2
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 4.0e-09 65.5 137 33.6
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 6.9e-09 64.7 46 67.4
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 9.0e-09 64.3 141 26.2
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 2.6e-08 62.8 153 32.0
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.5e-08 62.0 40 70.0
Prupe.2G019400 Prunus persica HOM05D004108 ORTHO05D004849 3.2e-06 55.8 40 65.0


User provided reference genes

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