Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 8.7e-184 646.7 307 100.0
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 9.7e-167 590.1 307 88.9
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.6e-164 582.8 307 88.6
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 2.6e-164 582.0 307 88.3
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 7.7e-164 580.5 307 87.9
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 1.5e-162 576.2 307 86.6
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 2.2e-158 562.4 306 85.6
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 1.4e-149 533.1 307 81.1
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 4.7e-137 491.5 305 75.1
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 6.8e-136 487.6 308 73.7
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 1.2e-135 486.9 330 76.7
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 2.6e-135 485.7 305 75.1
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 1.7e-134 483.0 304 74.3
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 6.4e-134 481.1 305 73.8
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 1.4e-133 479.9 301 75.4
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 1.8e-133 479.6 305 72.5
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 2.4e-133 479.2 302 75.2
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 3.2e-133 478.8 306 72.5
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 3.2e-133 478.8 306 73.5
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 4.1e-133 478.4 302 74.5
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 5.4e-133 478.0 304 73.7
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 5.4e-133 478.0 310 72.3
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 1.2e-132 476.9 302 74.2
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 1.6e-132 476.5 303 73.9
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 1.6e-132 476.5 303 73.9
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 2.7e-132 475.7 301 74.4
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 7.8e-132 474.2 303 75.2
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 7.8e-132 474.2 328 69.2
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 1.7e-131 473.0 302 73.8
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 5.0e-131 471.5 305 71.8
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 6.6e-131 471.1 303 73.3
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 8.6e-131 470.7 305 72.1
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 1.1e-130 470.3 305 71.8
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.5e-130 469.9 305 71.5
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 1.5e-130 469.9 305 71.1
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 2.5e-130 469.2 301 73.4
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 5.6e-130 468.0 303 71.0
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 2.1e-129 466.1 300 72.7
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 8.0e-129 464.2 307 70.4
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 8.0e-129 464.2 307 70.4
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 1.4e-128 463.4 308 69.5
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.3e-128 462.6 303 69.6
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 3.1e-128 462.2 302 71.2
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 5.2e-128 461.5 305 70.8
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 6.8e-128 461.1 304 70.7
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.5e-127 459.9 302 71.2
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 1.5e-127 459.9 303 70.3
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 2.0e-127 459.5 303 69.3
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 2.0e-127 459.5 303 70.0
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 3.4e-127 458.8 302 72.2
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 5.8e-127 458.0 315 69.8
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 5.8e-127 458.0 307 71.3
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 7.5e-127 457.6 334 65.3
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 7.5e-127 457.6 308 69.5
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 1.3e-126 456.8 300 70.0
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 6.4e-126 454.5 306 69.3
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 8.3e-126 454.1 302 69.5
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 8.3e-126 454.1 303 72.9
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 1.9e-125 453.0 305 69.2
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 1.9e-125 453.0 302 69.5
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 4.1e-125 451.8 302 70.5
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 5.4e-125 451.4 313 67.7
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 9.2e-125 450.7 300 70.7
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 9.2e-125 450.7 300 70.7
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 9.2e-125 450.7 303 70.0
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 1.6e-124 449.9 306 68.0
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 2.7e-124 449.1 305 69.2
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 3.5e-124 448.7 302 70.5
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 7.8e-124 447.6 303 68.6
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.0e-123 447.2 302 70.5
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 3.0e-123 445.7 303 68.0
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 3.9e-123 445.3 303 69.0
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 5.0e-123 444.9 307 67.1
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 5.0e-123 444.9 302 68.5
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 6.6e-123 444.5 304 68.8
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 1.1e-122 443.7 308 68.8
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 1.1e-122 443.7 298 69.5
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 1.5e-122 443.4 305 68.5
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 9.5e-122 440.7 290 71.0
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 1.2e-121 440.3 306 67.6
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 1.6e-121 439.9 302 68.2
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 1.6e-121 439.9 304 67.8
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 1.6e-121 439.9 302 68.5
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 2.8e-121 439.1 302 67.9
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 4.7e-121 438.3 305 68.9
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 1.4e-120 436.8 305 67.5
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 1.8e-120 436.4 303 68.6
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 2.3e-120 436.0 302 69.9
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 3.1e-120 435.6 302 68.5
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 1.5e-119 433.3 309 67.6
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 3.7e-118 428.7 309 66.0
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 5.4e-117 424.9 310 65.8
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 3.5e-116 422.2 303 66.0
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 7.8e-116 421.0 305 64.6
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 2.3e-115 419.5 346 60.1
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 3.0e-115 419.1 289 69.2
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 4.3e-114 415.2 302 64.6
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 3.6e-113 412.1 311 62.4
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 6.8e-112 407.9 303 65.0
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.2e-110 402.9 309 61.8
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 4.9e-110 401.7 319 63.3
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 7.1e-109 397.9 302 62.3
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 3.5e-108 395.6 303 59.4
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 4.6e-108 395.2 257 70.8
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 6.6e-107 391.3 229 80.8
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.6e-105 386.7 308 60.1
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 1.5e-103 380.2 303 61.4
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 5.8e-103 378.3 295 61.0
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.1e-101 374.0 219 77.2
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 6.0e-100 368.2 306 57.8
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 1.0e-99 367.5 250 68.0
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 1.4e-96 357.1 301 58.5
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 3.1e-96 355.9 302 58.6
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 3.4e-95 352.4 300 58.0
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 8.4e-94 347.8 250 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 5.4e-93 345.1 298 54.4
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 7.1e-93 344.7 304 53.9
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 1.2e-92 344.0 308 56.2
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 4.3e-90 335.5 301 56.5
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 2.1e-89 333.2 308 56.5
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 4.0e-88 328.9 250 58.4
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 5.8e-87 325.1 311 51.4
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 4.2e-85 318.9 309 49.2
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 2.5e-82 309.7 195 73.3
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 2.0e-79 300.1 183 78.1
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 1.1e-74 284.3 181 72.4
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 6.9e-64 248.4 177 65.0
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 5.0e-62 242.3 169 62.7
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 1.4e-59 234.2 167 65.3
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 1.8e-59 233.8 186 61.8
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 2.1e-52 210.3 131 74.0
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 3.6e-52 209.5 138 71.7
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 7.0e-48 195.3 174 59.8
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 1.0e-46 191.4 138 63.8
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 6.7e-43 178.7 280 40.4
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 9.1e-40 168.3 116 65.5
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 5.0e-38 162.5 113 69.0
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 2.3e-35 153.7 125 59.2
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 1.2e-31 141.4 159 49.7
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 1.6e-31 141.0 123 52.0
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 8.5e-30 135.2 116 60.3
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 4.9e-25 119.4 81 64.2
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 2.3e-19 100.5 70 61.4
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 2.7e-15 87.0 63 60.3
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 4.6e-15 86.3 55 67.3
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 4.7e-12 76.3 47 72.3
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 4.0e-11 73.2 101 50.5
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 9.2e-08 62.0 50 52.0
BcaC06g33893 Brassica carinata HOM05D005095 ORTHO05D092937 3.0e-06 57.0 42 59.5


User provided reference genes

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