Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 2.8e-32 141.4 73 100.0
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 4.7e-19 97.4 76 76.3
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 4.7e-19 97.4 76 76.3
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 4.7e-19 97.4 76 76.3
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 4.7e-19 97.4 78 78.2
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 3.7e-16 87.8 74 73.0
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 6.3e-16 87.0 68 73.5
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 1.6e-14 82.4 71 67.6
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 2.0e-14 82.0 72 69.4
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 3.5e-14 81.3 71 66.2
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 4.6e-14 80.9 74 67.6
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 5.9e-14 80.5 73 71.2
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 1.7e-13 79.0 73 65.8
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 1.7e-13 79.0 73 65.8
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 1.7e-13 79.0 73 65.8
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 2.9e-13 78.2 73 65.8
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 6.6e-13 77.0 72 63.9
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 6.6e-13 77.0 72 68.1
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 1.1e-12 76.3 72 61.1
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.1e-12 76.3 71 64.8
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 1.5e-12 75.9 75 65.3
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 3.3e-12 74.7 72 65.3
Nn4g22432 Nelumbo nucifera HOM05D007996 ORTHO05D009821 4.3e-12 74.3 78 62.8
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 9.5e-12 73.2 73 63.0
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 1.2e-11 72.8 76 63.2
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 1.2e-11 72.8 72 63.9
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 1.6e-11 72.4 46 84.8
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 2.1e-11 72.0 69 59.4
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 3.6e-11 71.2 81 56.8
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 3.6e-11 71.2 72 63.9
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 3.6e-11 71.2 72 62.5
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 6.1e-11 70.5 72 62.5
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 1.0e-10 69.7 78 59.0
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 1.4e-10 69.3 74 64.9
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 1.8e-10 68.9 69 59.4
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 1.8e-10 68.9 72 58.3
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 2.3e-10 68.6 69 60.9
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 2.3e-10 68.6 69 59.4
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 3.1e-10 68.2 72 62.5
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 4.0e-10 67.8 44 84.1
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 4.0e-10 67.8 72 61.1
Cc04_g10190 Coffea canephora HOM05D007996 ORTHO05D009821 6.8e-10 67.0 41 82.9
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 1.2e-09 66.2 71 60.6
COL.COLO4_16835 Corchorus olitorius HOM05D007996 ORTHO05D009821 1.5e-09 65.9 76 63.2
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 2.0e-09 65.5 70 62.9
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 2.0e-09 65.5 71 64.8
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 3.4e-09 64.7 72 56.9
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 3.4e-09 64.7 44 81.8
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 4.4e-09 64.3 67 62.7
Migut.I00487 Erythranthe guttata HOM05D007996 ORTHO05D009821 5.8e-09 63.9 37 78.4
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 5.8e-09 63.9 67 58.2
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 7.5e-09 63.5 71 57.7
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 2.2e-08 62.0 49 69.4
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 2.2e-08 62.0 71 62.0
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 2.9e-08 61.6 38 84.2
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 2.9e-08 61.6 70 62.9
RcHm_v2.0_Chr7g0190871 Rosa chinensis HOM05D007996 ORTHO05D009821 2.9e-08 61.6 71 57.7
Sp6g12420 Schrenkiella parvula HOM05D013032 ORTHO05D009821 3.7e-08 61.2 69 52.2
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 3.7e-08 61.2 51 70.6
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 8.3e-08 60.1 69 52.2
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 8.3e-08 60.1 72 54.2
Thhalv10015187m.g Eutrema salsugineum HOM05D013032 ORTHO05D009821 1.4e-07 59.3 69 52.2
Carub.0008s1039 Capsella rubella HOM05D013032 ORTHO05D009821 1.9e-07 58.9 69 50.7
FAN04G1274 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.9e-07 58.9 72 58.3
FAN13G1950 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.9e-07 58.9 72 58.3
TAR629G0997 Trochodendron aralioides HOM05D007996 ORTHO05D009821 1.9e-07 58.9 71 56.3
BcaC04g20800 Brassica carinata HOM05D013032 ORTHO05D009821 3.2e-07 58.2 69 50.7
A10p08350 Brassica napus HOM05D013032 ORTHO05D009821 3.2e-07 58.2 69 50.7
BolC9t56782H Brassica oleracea HOM05D013032 ORTHO05D009821 3.2e-07 58.2 69 50.7
BraSC37t46169Z Brassica rapa HOM05D013032 ORTHO05D009821 3.2e-07 58.2 69 50.7
FAN08G0192 Fragaria x ananassa HOM05D007996 ORTHO05D009821 3.2e-07 58.2 72 56.9
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 3.2e-07 58.2 72 56.9
CARHR258170 Cardamine hirsuta HOM05D013032 ORTHO05D009821 5.4e-07 57.4 70 52.9
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 5.4e-07 57.4 65 58.5
FAN18G2201 Fragaria x ananassa HOM05D007996 ORTHO05D009821 7.0e-07 57.0 72 55.6
Lsat_1_v5_gn_1_29541 Lactuca sativa HOM05D007996 ORTHO05D009821 7.0e-07 57.0 75 50.7
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 7.0e-07 57.0 72 52.8
AT5G50335 Arabidopsis thaliana HOM05D013032 ORTHO05D009821 9.2e-07 56.6 71 50.7
CAN.G352.51 Capsicum annuum HOM05D007996 ORTHO05D009821 9.2e-07 56.6 68 54.4
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 9.2e-07 56.6 69 60.9
Lj1g0020512 Lotus japonicus HOM05D007996 ORTHO05D009821 9.2e-07 56.6 75 60.0
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 2.0e-06 55.5 72 51.4
AL8G24410 Arabidopsis lyrata HOM05D013032 ORTHO05D009821 3.5e-06 54.7 71 49.3
MBI11_g42682_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 6.0e-06 53.9 83 44.6


User provided reference genes

Program Settings