Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 4.2e-113 411.4 211 100.0
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 1.0e-74 283.9 211 71.1
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 1.4e-68 263.5 210 68.6
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 2.1e-67 259.6 208 69.2
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 9.6e-65 250.8 208 66.3
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 3.1e-63 245.7 208 65.4
Gohir.D12G181600 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.5e-57 226.9 194 64.4
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 1.9e-57 226.5 194 64.4
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 7.4e-57 224.6 194 64.9
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 1.1e-31 141.0 220 45.5
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 1.8e-23 113.6 206 43.2
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 2.0e-22 110.2 209 40.7
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 2.0e-22 110.2 186 44.1
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.3e-21 107.5 190 38.4
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 2.2e-21 106.7 176 42.6
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 2.9e-21 106.3 184 42.4
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 5.0e-21 105.5 190 38.4
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 5.0e-21 105.5 190 37.9
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 6.5e-21 105.1 182 39.0
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 1.5e-20 104.0 196 41.3
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 2.7e-19 99.8 223 37.2
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 4.7e-19 99.0 225 36.4
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 5.2e-18 95.5 185 38.9
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 5.7e-17 92.0 194 37.1
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 7.5e-17 91.7 234 35.5
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 7.5e-17 91.7 192 39.1
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 8.2e-16 88.2 182 41.8
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 7.0e-15 85.1 214 33.6
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 7.0e-15 85.1 208 34.6
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 1.2e-14 84.3 206 36.9
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 2.0e-14 83.6 194 38.7
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 5.9e-14 82.0 192 36.5
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 5.9e-14 82.0 234 35.0
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 2.9e-13 79.7 198 35.4
Nitab4.5_0005900g0030 Nicotiana tabacum HOM05D012087 ORTHO05D005932 6.5e-13 78.6 242 31.4
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 1.1e-12 77.8 146 37.7
PGSC0003DMG400024562 Solanum tuberosum HOM05D012087 ORTHO05D005932 1.1e-12 77.8 213 31.5
Nitab4.5_0001211g0150 Nicotiana tabacum HOM05D012087 ORTHO05D005932 2.5e-12 76.6 239 31.8
Lj4g0010683 Lotus japonicus HOM05D008369 ORTHO05D005932 3.2e-12 76.3 175 36.6
Sc12g0006540 Simmondsia chinensis HOM05D008369 ORTHO05D005932 7.2e-12 75.1 160 34.4
Lsat_1_v5_gn_1_14361 Lactuca sativa HOM05D008369 ORTHO05D005932 1.2e-11 74.3 210 32.9
Phvul.003G188100 Phaseolus vulgaris HOM05D008369 ORTHO05D005932 2.1e-11 73.6 160 36.9
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 2.7e-11 73.2 212 32.1
Glyma.05G024700 Glycine max HOM05D008369 ORTHO05D005932 3.6e-11 72.8 156 37.8
Solyc03g115730.3 Solanum lycopersicum HOM05D012087 ORTHO05D005932 4.7e-11 72.4 213 30.5
Sopen03g034710 Solanum pennellii HOM05D012087 ORTHO05D005932 4.7e-11 72.4 213 30.5
CAN.G479.59 Capsicum annuum HOM05D012087 ORTHO05D005932 6.1e-11 72.0 204 31.4
HanXRQChr05g0155031 Helianthus annuus HOM05D008369 ORTHO05D011941 6.1e-11 72.0 216 31.0
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 8.0e-11 71.6 192 36.5
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 8.0e-11 71.6 157 38.9
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 1.8e-10 70.5 214 29.9
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 1.8e-10 70.5 193 33.2
Cpa.g.sc13.297 Carica papaya HOM05D008369 ORTHO05D005932 3.0e-10 69.7 198 32.3
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 3.0e-10 69.7 192 32.8
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 4.0e-10 69.3 160 34.4
THA.LOC104818323 Tarenaya hassleriana HOM05D010063 ORTHO05D011941 6.8e-10 68.6 243 28.0
Actinidia04866 Actinidia chinensis HOM05D008369 ORTHO05D005932 8.8e-10 68.2 221 29.4
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 1.5e-09 67.4 152 36.2
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 4.4e-09 65.9 190 35.3
CsaV3_1G005690 Cucumis sativus L. HOM05D008369 ORTHO05D005932 9.8e-09 64.7 226 31.0
Peaxi162Scf00274g00335 Petunia axillaris HOM05D012087 ORTHO05D005932 9.8e-09 64.7 203 30.5
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 1.3e-08 64.3 207 31.4
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 1.7e-08 63.9 191 34.0
CiPaw.06G088700 Carya illinoinensis HOM05D009095 ORTHO05D005932 2.2e-08 63.5 186 35.5
CANSAT80G1936 Cannabis sativa HOM05D008369 ORTHO05D005932 3.7e-08 62.8 186 30.6
MELO3C002000.2 Cucumis melo HOM05D008369 ORTHO05D005932 4.8e-08 62.4 209 33.0
Migut.L01243 Erythranthe guttata HOM05D009095 ORTHO05D005932 4.8e-08 62.4 164 32.9
TAR622G0621 Trochodendron aralioides HOM05D034691 ORTHO05D005932 1.4e-07 60.8 189 31.2
vmacro01343 Vaccinium macrocarpon HOM05D009095 ORTHO05D005932 2.4e-07 60.1 199 33.2
SGA_v2.0_scaffold313G48329 Striga asiatica HOM05D012087 ORTHO05D005932 4.1e-07 59.3 211 30.8
Glyma.17G102500 Glycine max HOM05D008369 ORTHO05D005932 5.4e-07 58.9 155 34.2
Oeu052457.1 Olea europaea HOM05D012087 ORTHO05D005932 5.4e-07 58.9 106 38.7
A03p03440 Brassica napus HOM05D010063 ORTHO05D011941 7.0e-07 58.5 62 50.0
COL.COLO4_27972 Corchorus olitorius HOM05D009095 ORTHO05D005932 7.0e-07 58.5 212 28.8
PSO063G4624 Papaver somniferum HOM05D037250 ORTHO05D050201 1.2e-06 57.8 219 28.8
SalBow5G3698 Salvia bowleyana HOM05D012087 ORTHO05D005932 1.2e-06 57.8 222 27.9
Sp6g35170 Schrenkiella parvula HOM05D010063 ORTHO05D011941 1.6e-06 57.4 102 36.3
ClCG04G012080 Citrullus lanatus HOM05D008369 ORTHO05D005932 2.7e-06 56.6 176 31.8
Thecc.02G339500 Theobroma cacao HOM05D009095 ORTHO05D005932 2.7e-06 56.6 179 28.5
AL6G18100 Arabidopsis lyrata HOM05D010063 ORTHO05D011941 3.5e-06 56.2 102 32.4
Carub.0008s2203 Capsella rubella HOM05D010063 ORTHO05D011941 3.5e-06 56.2 182 31.9
Migut.D01759 Erythranthe guttata HOM05D012087 ORTHO05D005932 3.5e-06 56.2 226 27.9
Hund02625 Selenicereus undatus HOM05D008369 ORTHO05D005932 3.5e-06 56.2 155 29.7
Aa31LG3G18710 Aethionema arabicum HOM05D010063 ORTHO05D011941 5.9e-06 55.5 74 41.9
Thhalv10014431m.g Eutrema salsugineum HOM05D010063 ORTHO05D011941 5.9e-06 55.5 69 44.9
BraA03t09694Z Brassica rapa HOM05D010063 ORTHO05D011941 7.7e-06 55.1 69 43.5


User provided reference genes

Program Settings