Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 1.1e-87 326.6 174 100.0
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 2.2e-62 242.7 174 78.7
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 7.4e-55 217.6 174 73.0
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 8.5e-51 204.1 172 68.0
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.9e-50 203.0 175 65.1
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 2.1e-49 199.5 179 67.6
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.1e-49 199.5 176 67.6
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.6e-49 198.7 176 67.6
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 6.7e-48 194.5 183 64.5
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.4e-45 186.0 177 65.5
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 5.3e-45 184.9 177 65.0
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.9e-44 181.4 177 63.3
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 5.0e-43 178.3 180 62.2
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.5e-43 177.9 175 64.0
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 2.1e-41 172.9 173 61.3
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.6e-41 172.2 177 63.8
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 4.7e-41 171.8 178 61.2
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 6.7e-40 167.9 176 60.2
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 6.7e-40 167.9 176 60.8
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.0e-39 166.4 174 58.6
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.4e-39 165.2 132 68.9
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.3e-38 163.7 142 64.8
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 1.7e-38 163.3 175 57.1
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 4.8e-38 161.8 178 58.4
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 2.4e-37 159.5 174 56.3
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 3.1e-37 159.1 173 57.8
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 3.1e-37 159.1 174 55.7
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 7.0e-37 157.9 173 55.5
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 2.0e-36 156.4 174 54.6
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 5.9e-36 154.8 179 56.4
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.0e-35 154.1 176 54.5
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.7e-35 153.3 178 53.9
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.7e-35 153.3 178 53.9
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 1.7e-35 153.3 176 56.2
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 2.9e-35 152.5 159 59.1
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 8.5e-35 151.0 178 53.4
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.1e-34 150.6 188 55.3
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.1e-34 150.6 160 61.2
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 1.9e-34 149.8 173 53.8
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 9.4e-34 147.5 178 54.5
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.6e-33 146.7 173 54.9
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.6e-33 146.7 173 54.9
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.7e-33 146.0 182 57.1
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 3.6e-33 145.6 177 54.8
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 6.1e-33 144.8 178 55.1
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 6.1e-33 144.8 178 55.1
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.1e-33 144.8 180 54.4
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 6.8e-32 141.4 128 65.6
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 8.8e-32 141.0 123 67.5
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.5e-31 140.2 175 54.3
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 4.4e-31 138.7 175 52.6
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 7.5e-31 137.9 181 56.9
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 9.8e-31 137.5 173 52.0
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 9.8e-31 137.5 130 63.8
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 9.8e-31 137.5 175 54.3
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 9.8e-31 137.5 175 54.3
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 9.8e-31 137.5 175 54.3
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 9.8e-31 137.5 175 52.6
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 1.7e-30 136.7 118 65.3
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 2.2e-30 136.3 181 56.9
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 4.8e-30 135.2 173 50.9
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 6.3e-30 134.8 170 55.3
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 6.3e-30 134.8 173 53.2
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 6.3e-30 134.8 172 50.6
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 3.1e-29 132.5 170 50.6
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 5.4e-29 131.7 173 51.4
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 7.0e-29 131.3 176 52.3
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 1.6e-28 130.2 190 48.9
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 3.5e-28 129.0 175 54.3
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 3.5e-28 129.0 173 49.1
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 7.7e-28 127.9 126 57.9
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.7e-27 126.7 123 61.8
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 1.7e-27 126.7 134 55.2
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 2.9e-27 125.9 173 50.9
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 2.9e-27 125.9 173 50.3
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.8e-27 125.6 183 51.9
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 3.8e-27 125.6 175 51.4
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 5.0e-27 125.2 175 44.6
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 6.5e-27 124.8 125 60.8
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 6.5e-27 124.8 174 50.0
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 8.6e-27 124.4 174 49.4
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.5e-26 123.6 124 58.1
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 2.5e-26 122.9 175 47.4
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 2.5e-26 122.9 175 47.4
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 5.5e-26 121.7 183 50.8
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 5.5e-26 121.7 156 54.5
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 6.1e-25 118.2 173 47.4
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.1e-25 118.2 178 51.1
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 1.0e-24 117.5 178 51.1
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 1.0e-24 117.5 169 45.6
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 2.3e-24 116.3 172 44.2
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 2.6e-23 112.8 118 60.2
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 3.4e-23 112.5 170 47.1
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 3.4e-23 112.5 175 49.1
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 7.5e-23 111.3 181 49.2
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 2.2e-22 109.8 190 44.2
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 3.7e-22 109.0 130 56.9
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 6.3e-22 108.2 179 45.3
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 6.3e-22 108.2 175 47.4
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 8.3e-22 107.8 181 47.0
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 1.4e-21 107.1 174 44.3
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 1.4e-21 107.1 172 45.3
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 1.4e-21 107.1 174 41.4
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 3.1e-21 105.9 179 46.4
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 4.1e-21 105.5 173 45.7
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 9.2e-21 104.4 171 45.6
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 1.2e-20 104.0 179 45.3
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 1.6e-20 103.6 152 48.7
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 2.7e-20 102.8 173 44.5
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 3.5e-20 102.4 182 43.4
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 3.5e-20 102.4 173 44.5
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.5e-20 102.1 164 48.2
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 5.9e-20 101.7 247 38.5
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 5.9e-20 101.7 173 45.1
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 1.0e-19 100.9 182 44.5
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 1.0e-19 100.9 173 45.7
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 1.3e-19 100.5 182 42.9
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 3.8e-19 99.0 200 42.0
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 1.1e-18 97.4 181 43.6
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 1.2e-17 94.0 125 48.0
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 8.0e-17 91.3 135 51.1
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.0e-16 90.9 174 44.3
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 1.4e-16 90.5 178 41.0
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.4e-16 90.5 187 40.6
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 3.0e-16 89.4 200 39.5
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 4.0e-16 89.0 180 41.7
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 5.2e-16 88.6 176 42.6
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 1.5e-15 87.0 89 58.4
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.1e-13 80.9 171 40.9
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 4.1e-13 79.0 132 43.9
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 5.4e-13 78.6 171 38.6
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 6.0e-12 75.1 141 40.4
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 3.0e-11 72.8 175 39.4
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 3.0e-11 72.8 133 39.1
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 8.6e-11 71.2 140 32.9
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 1.1e-10 70.9 178 37.1
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.1e-10 70.9 175 38.9
Oeu045270.1 Olea europaea HOM05D005335 ORTHO05D006472 1.9e-10 70.1 52 69.2
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 3.3e-10 69.3 159 36.5
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 6.2e-09 65.1 73 43.8
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 8.0e-09 64.7 76 42.1
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 1.4e-08 63.9 82 45.1
ClCG01G006810 Citrullus lanatus HOM05D000179 ORTHO05D000107 2.3e-08 63.2 74 50.0
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 3.1e-08 62.8 165 32.1
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 4.0e-08 62.4 135 34.1
QL03p039252 Quercus lobata HOM05D000179 ORTHO05D000107 4.0e-08 62.4 88 43.2
CiPaw.05G159500 Carya illinoinensis HOM05D000179 ORTHO05D000107 8.9e-08 61.2 84 42.9
Gohir.A11G002000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 8.9e-08 61.2 177 34.5
MD13G1015000 Malus domestica HOM05D000179 ORTHO05D000107 8.9e-08 61.2 165 35.2
Thecc.02G302800 Theobroma cacao HOM05D000179 ORTHO05D000107 1.2e-07 60.8 135 32.6
HPP92_019339 Vanilla planifolia HOM05D000179 ORTHO05D000107 1.2e-07 60.8 167 30.5
ECA246G0037 Erigeron canadensis HOM05D005335 ORTHO05D006472 1.5e-07 60.5 173 32.4
Glyma.05G248300 Glycine max HOM05D000179 ORTHO05D000107 2.6e-07 59.7 76 40.8
Lalb_Chr14g0370451 Lupinus albus HOM05D000179 ORTHO05D028851 3.4e-07 59.3 91 35.2
Hma1.2p1_0095F.1_g047490 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 4.4e-07 58.9 102 38.2
VMungo0464G1769 Vigna mungo HOM05D000179 ORTHO05D000107 7.5e-07 58.2 150 30.7
Nitab4.5_0000521g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 9.8e-07 57.8 76 42.1
Nitab4.5_0002202g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 9.8e-07 57.8 76 42.1
PGSC0003DMG400026959 Solanum tuberosum HOM05D000179 ORTHO05D000107 9.8e-07 57.8 76 40.8
RcHm_v2.0_Chr4g0445361 Rosa chinensis HOM05D000179 ORTHO05D000107 1.3e-06 57.4 136 33.8
unitig_8.g4035 Utricularia gibba HOM05D005335 ORTHO05D006472 1.7e-06 57.0 126 40.5
CDE05G3493 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 2.2e-06 56.6 85 40.0
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 2.2e-06 56.6 85 38.8
Gorai.006G190500 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.9e-06 56.2 82 40.2
Glyma.08G056800 Glycine max HOM05D000179 ORTHO05D000107 3.7e-06 55.8 75 38.7
VMungo0251G2660 Vigna mungo HOM05D000179 ORTHO05D000107 3.7e-06 55.8 85 42.4
CDE05G0728 Ceratophyllum demersum HOM05D000229 ORTHO05D000182 4.9e-06 55.5 127 32.3
Sabra10G0073800 Salix brachista HOM05D000179 ORTHO05D000107 4.9e-06 55.5 173 30.1
Actinidia39836 Actinidia chinensis HOM05D000179 ORTHO05D000107 8.3e-06 54.7 68 45.6


User provided reference genes

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