Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 1.3e-68 263.5 198 100.0
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 3.0e-60 235.7 197 87.3
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 8.2e-58 227.6 200 86.0
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 5.3e-57 224.9 200 84.5
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 3.4e-56 222.2 200 84.0
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 3.9e-44 182.2 150 92.0
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 9.4e-38 161.0 194 72.2
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 1.5e-35 153.7 198 66.7
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 3.3e-35 152.5 152 82.9
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 1.7e-34 150.2 151 82.8
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 2.8e-34 149.4 149 81.9
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 3.7e-34 149.1 152 80.9
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 6.3e-34 148.3 191 66.5
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 8.2e-34 147.9 152 80.3
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 2.4e-33 146.4 199 65.8
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 9.1e-33 144.4 152 79.6
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 1.2e-32 144.1 199 65.3
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 1.2e-32 144.1 151 80.1
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 3.5e-32 142.5 200 67.5
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 7.7e-32 141.4 199 64.8
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 3.8e-31 139.0 200 65.0
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 5.0e-31 138.7 153 79.7
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 6.5e-31 138.3 190 66.8
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 1.1e-30 137.5 151 79.5
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 1.5e-30 137.1 200 65.0
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 5.5e-30 135.2 198 62.6
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 9.4e-30 134.4 203 62.1
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 1.2e-29 134.0 199 66.3
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 2.7e-29 132.9 200 62.5
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 1.8e-28 130.2 153 75.2
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.1e-27 127.5 142 78.2
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 2.0e-27 126.7 151 74.8
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 5.7e-27 125.2 147 74.8
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 5.7e-27 125.2 151 76.8
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 7.5e-27 124.8 145 73.1
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 7.5e-27 124.8 139 79.1
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 9.7e-27 124.4 200 60.0
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 1.3e-26 124.0 151 73.5
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 1.7e-26 123.6 198 60.6
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 1.7e-26 123.6 151 74.2
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 2.2e-26 123.2 151 72.2
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 2.2e-26 123.2 139 74.8
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 2.2e-26 123.2 196 64.8
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 2.8e-26 122.9 197 61.9
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 3.7e-26 122.5 196 61.7
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 4.8e-26 122.1 151 74.8
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 1.1e-25 120.9 137 78.1
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 1.1e-25 120.9 186 64.5
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 1.8e-25 120.2 189 64.0
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 9.1e-25 117.9 196 62.8
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 1.2e-24 117.5 190 61.6
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 1.2e-24 117.5 152 73.0
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 1.2e-24 117.5 196 61.2
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 1.6e-24 117.1 118 87.3
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 2.7e-24 116.3 190 61.6
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 4.5e-24 115.5 197 60.9
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 4.5e-24 115.5 148 73.0
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 5.9e-24 115.2 150 71.3
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 1.1e-22 110.9 148 69.6
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 5.5e-22 108.6 139 74.1
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 9.4e-22 107.8 194 57.2
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 1.6e-21 107.1 118 85.6
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 4.7e-21 105.5 199 55.8
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 6.1e-21 105.1 207 56.0
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 2.3e-20 103.2 120 80.0
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 3.0e-20 102.8 197 58.4
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 3.0e-20 102.8 117 83.8
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 4.0e-20 102.4 125 80.8
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 4.0e-20 102.4 197 56.9
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 8.8e-20 101.3 117 82.9
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 8.8e-20 101.3 117 82.9
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 8.8e-20 101.3 191 59.2
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 1.2e-19 100.9 127 74.8
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 1.5e-19 100.5 117 82.9
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 2.6e-19 99.8 152 67.1
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 3.4e-19 99.4 199 55.8
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 3.4e-19 99.4 120 78.3
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 4.4e-19 99.0 117 81.2
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 4.4e-19 99.0 150 68.0
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 4.4e-19 99.0 117 81.2
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 4.4e-19 99.0 117 82.1
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 5.7e-19 98.6 88 81.8
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 5.7e-19 98.6 117 81.2
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 5.7e-19 98.6 117 81.2
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 5.7e-19 98.6 142 45.1
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 7.5e-19 98.2 117 80.3
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 9.8e-19 97.8 117 81.2
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.7e-18 97.1 89 78.7
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 2.2e-18 96.7 117 78.6
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 3.7e-18 95.9 89 77.5
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 3.7e-18 95.9 120 78.3
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 8.3e-18 94.7 117 81.2
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 8.3e-18 94.7 120 77.5
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 1.1e-17 94.4 65 78.5
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 1.4e-17 94.0 64 78.1
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 1.4e-17 94.0 150 64.7
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 3.1e-17 92.8 138 65.2
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 4.1e-17 92.4 89 76.4
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 5.4e-17 92.0 89 76.4
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 5.9e-16 88.6 89 73.0
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 2.2e-15 86.7 116 73.3
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 2.9e-15 86.3 117 75.2
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 6.5e-15 85.1 117 76.9
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 3.2e-14 82.8 126 72.2
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 9.4e-14 81.3 119 73.9
Actinidia04818 Actinidia chinensis HOM05D007161 ORTHO05D009103 2.7e-13 79.7 151 63.6
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 1.8e-12 77.0 64 64.1
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 4.9e-10 68.9 55 61.8
Duzib205G1087 Durio zibethinus HOM05D007161 ORTHO05D186269 5.4e-09 65.5 65 78.5
unitig_0.g5 Utricularia gibba HOM05D000887 ORTHO05D000908 2.7e-08 63.2 109 72.5


User provided reference genes

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