Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 5.1e-160 567.8 306 100.0
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.1e-108 396.4 244 90.2
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.0e-103 379.8 246 87.4
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 4.9e-102 375.2 240 88.8
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.6e-100 370.2 243 87.2
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.6e-100 370.2 243 87.2
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 9.9e-95 350.9 244 83.6
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 3.1e-88 329.3 254 68.9
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.3e-86 323.9 245 69.8
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.7e-86 323.6 257 66.9
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.7e-86 323.6 250 67.6
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 6.4e-86 321.6 245 66.9
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.4e-86 321.6 245 66.9
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 8.4e-86 321.2 245 69.0
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 2.4e-85 319.7 247 74.1
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 2.4e-85 319.7 245 68.2
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 5.4e-85 318.5 246 67.9
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 5.4e-85 318.5 245 67.3
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 7.1e-85 318.2 250 65.2
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 9.3e-85 317.8 245 68.6
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.2e-84 317.4 248 67.3
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.6e-84 317.0 289 59.2
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.7e-84 316.2 251 67.3
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 4.6e-84 315.5 247 67.2
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 6.0e-84 315.1 246 67.1
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.0e-83 314.3 241 68.9
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.0e-83 314.3 245 67.3
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.7e-83 313.5 245 66.5
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.0e-83 312.8 246 67.5
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 3.9e-83 312.4 253 64.8
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 8.7e-83 311.2 244 67.6
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.1e-82 310.8 241 73.9
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.1e-82 310.8 241 73.9
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.5e-82 309.7 238 73.5
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 2.5e-82 309.7 248 66.5
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 5.6e-82 308.5 245 65.3
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 5.6e-82 308.5 249 65.1
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 7.3e-82 308.1 261 72.8
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.3e-81 307.4 248 65.3
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.6e-81 307.0 240 66.2
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.8e-81 306.2 248 64.9
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 2.8e-81 306.2 282 67.0
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 6.2e-81 305.1 240 64.6
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 8.1e-81 304.7 250 71.6
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.4e-80 303.9 250 71.6
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.4e-80 303.9 176 81.8
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.4e-80 303.9 248 64.9
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.8e-80 303.5 245 66.1
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 5.3e-80 302.0 179 79.9
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 6.9e-80 301.6 175 82.3
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 6.9e-80 301.6 244 73.4
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 9.0e-80 301.2 247 64.8
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 1.5e-79 300.4 247 72.5
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 3.4e-79 299.3 240 65.8
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 4.5e-79 298.9 241 63.5
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 7.6e-79 298.1 246 65.9
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.7e-78 297.0 243 62.6
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.9e-78 296.2 241 66.4
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 2.9e-78 296.2 241 61.0
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 6.4e-78 295.0 253 61.3
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 1.4e-77 293.9 186 75.8
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 3.2e-77 292.7 245 62.9
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 3.2e-77 292.7 251 61.0
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 4.2e-77 292.4 276 64.5
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 7.1e-77 291.6 241 61.0
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 1.2e-76 290.8 244 66.0
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 2.1e-76 290.0 240 62.1
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.7e-76 289.7 185 77.3
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.5e-76 289.3 382 51.0
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 4.6e-76 288.9 174 77.6
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 6.0e-76 288.5 175 76.6
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.0e-75 287.7 247 61.1
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.0e-75 287.7 181 77.3
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.3e-75 287.3 242 62.8
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 1.3e-75 287.3 289 58.5
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.1e-74 284.3 172 77.9
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 2.5e-74 283.1 241 58.9
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 2.5e-74 283.1 176 77.3
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 9.6e-74 281.2 176 76.7
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.3e-73 280.8 176 76.7
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 6.2e-73 278.5 294 56.8
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 8.1e-73 278.1 260 56.5
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.1e-73 278.1 172 77.3
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.8e-72 276.9 175 75.4
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.4e-72 276.6 241 58.9
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 3.1e-72 276.2 244 58.6
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 5.3e-72 275.4 240 58.8
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 9.0e-72 274.6 246 57.7
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 9.0e-72 274.6 245 58.0
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 3.4e-71 272.7 241 57.7
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 3.4e-71 272.7 241 57.7
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 4.5e-71 272.3 262 56.1
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 4.5e-71 272.3 273 54.9
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 4.5e-71 272.3 246 63.0
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 7.6e-71 271.6 162 79.0
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 2.2e-70 270.0 241 57.3
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.9e-69 266.9 241 55.2
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.9e-69 266.9 240 60.4
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 2.5e-69 266.5 253 57.3
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 7.1e-69 265.0 177 69.5
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 4.6e-68 262.3 168 75.6
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 7.9e-68 261.5 240 62.5
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 7.9e-68 261.5 241 64.3
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-67 261.2 143 83.9
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-67 261.2 143 83.9
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 5.1e-67 258.8 242 57.0
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 1.4e-64 250.8 246 53.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.1e-64 249.6 186 66.7
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 5.3e-64 248.8 242 56.2
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 5.3e-64 248.8 242 56.2
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 2.0e-63 246.9 174 67.2
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.7e-62 243.8 240 55.4
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.3e-57 227.6 186 58.1
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 6.5e-54 215.3 126 80.2
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 2.5e-53 213.4 117 84.6
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.5e-50 203.4 179 54.7
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.4e-48 197.6 231 47.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 9.1e-48 194.9 192 57.3
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-47 194.5 172 58.1
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 5.0e-46 189.1 170 52.4
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.6e-42 176.8 179 54.2
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 9.1e-40 168.3 229 41.0
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.9e-37 160.6 88 84.1
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 2.3e-35 153.7 87 82.8
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 7.7e-31 138.7 87 77.0
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-27 127.9 117 54.7
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.8e-27 125.2 72 81.9
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.6e-26 123.6 69 84.1
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 9.1e-24 115.2 131 54.2
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 4.5e-23 112.8 162 39.5
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.5e-18 97.8 59 78.0
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 9.8e-18 95.1 87 52.9
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.2e-17 94.0 136 48.5
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.7e-17 93.2 57 73.7
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 8.3e-17 92.0 59 71.2
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 4.5e-15 86.3 62 62.9
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 2.5e-13 80.5 55 76.4
EL10Ac7g16227 Beta vulgaris HOM05D006479 ORTHO05D008310 3.9e-06 56.6 76 36.8
Gohir.D05G078100 Gossypium hirsutum HOM05D006479 ORTHO05D008310 8.6e-06 55.5 96 32.3
Gorai.009G079600 Gossypium raimondii HOM05D006479 ORTHO05D008310 8.6e-06 55.5 96 32.3
Manes.04G055500 Manihot esculenta HOM05D006479 ORTHO05D008310 8.6e-06 55.5 77 32.5
Oeu025955.1 Olea europaea HOM05D006479 ORTHO05D008310 8.6e-06 55.5 88 34.1


User provided reference genes

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