Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G1105 Durio zibethinus HOM05D007269 ORTHO05D008531 2.0e-104 382.5 202 100.0
Thecc.03G133000 Theobroma cacao HOM05D007269 ORTHO05D008531 5.6e-70 268.1 207 73.4
Duzib068G0517 Durio zibethinus HOM05D007269 ORTHO05D008531 7.0e-65 251.1 199 70.4
COL.COLO4_36213 Corchorus olitorius HOM05D007269 ORTHO05D008531 6.0e-64 248.1 207 71.5
Gohir.D12G192900 Gossypium hirsutum HOM05D007269 ORTHO05D008531 7.6e-43 177.9 198 57.1
Potri.015G099800 Populus trichocarpa HOM05D007269 ORTHO05D008531 3.8e-42 175.6 206 52.9
Gohir.A12G190800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 1.4e-41 173.7 198 57.1
Gorai.008G207700 Gossypium raimondii HOM05D007269 ORTHO05D008531 1.4e-41 173.7 198 56.1
Manes.14G048800 Manihot esculenta HOM05D007269 ORTHO05D008531 2.3e-39 166.4 207 51.7
Sabra15G0120500 Salix brachista HOM05D007269 ORTHO05D008531 1.1e-36 157.5 197 49.7
Potri.012G101800 Populus trichocarpa HOM05D007269 ORTHO05D008531 1.8e-36 156.8 196 48.0
Ciclev10032833m.g Citrus clementina HOM05D007269 ORTHO05D008531 4.0e-36 155.6 188 53.2
Sabra12G0074700 Salix brachista HOM05D001095 ORTHO05D000976 1.7e-34 150.2 194 45.4
Atru.chr6.1845 Acer truncatum HOM05D007269 ORTHO05D008531 2.2e-34 149.8 193 49.7
QL10p002347 Quercus lobata HOM05D007269 ORTHO05D008531 4.2e-33 145.6 203 50.7
CiPaw.11G004900 Carya illinoinensis HOM05D007269 ORTHO05D008531 1.3e-31 140.6 191 46.6
RcHm_v2.0_Chr7g0189701 Rosa chinensis HOM05D007269 ORTHO05D008531 1.1e-28 131.0 219 42.5
Aqoxy3G01626 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 9.0e-28 127.9 229 40.2
FAN08G0669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 4.5e-27 125.6 222 39.6
Nn4g22252 Nelumbo nucifera HOM05D007269 ORTHO05D008531 5.8e-27 125.2 197 41.6
Aqoxy5G03286 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 2.2e-26 123.2 210 41.9
PSO017G6998 Papaver somniferum HOM05D007269 ORTHO05D008531 2.2e-26 123.2 211 38.9
FAN13G1779 Fragaria x ananassa HOM05D007269 ORTHO05D008531 8.4e-26 121.3 221 38.9
FvH4_5g08680 Fragaria vesca HOM05D007269 ORTHO05D008531 1.9e-25 120.2 218 38.5
FAN18G2199 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.9e-25 120.2 218 38.5
FAN28G2669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.9e-25 120.2 218 38.5
Haze_07172 Corylus avellana HOM05D007269 ORTHO05D008531 7.1e-25 118.2 206 42.2
Cfa018768 Carpinus fangiana HOM05D007269 ORTHO05D008531 9.3e-25 117.9 201 41.8
MD06G1137900 Malus domestica HOM05D007269 ORTHO05D008531 9.3e-25 117.9 210 42.4
Prupe.5G148200 Prunus persica HOM05D007269 ORTHO05D008531 2.7e-24 116.3 206 40.3
Nn3g16393 Nelumbo nucifera HOM05D007269 ORTHO05D008531 3.5e-24 115.9 210 40.5
FAN06G3947 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.0e-23 114.4 212 37.7
Manes.13G008500 Manihot esculenta HOM05D007269 ORTHO05D008531 1.8e-23 113.6 223 41.3
MD14G1153300 Malus domestica HOM05D007269 ORTHO05D008531 2.3e-23 113.2 207 39.6
CSS0016059 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 3.0e-23 112.8 215 40.5
Potri.001G059800 Populus trichocarpa HOM05D007269 ORTHO05D008531 3.0e-23 112.8 213 37.6
Sopen03g028190 Solanum pennellii HOM05D007269 ORTHO05D008531 8.7e-23 111.3 212 39.6
Nitab4.5_0000021g1020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 1.1e-22 110.9 238 39.1
Cpa.g.sc4.165 Carica papaya HOM05D007269 ORTHO05D008531 3.3e-22 109.4 202 41.6
Nitab4.5_0002530g0020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 7.4e-22 108.2 226 36.7
PGR119G1209 Punica granatum HOM05D007269 ORTHO05D008531 7.4e-22 108.2 210 36.7
Phvul.002G285300 Phaseolus vulgaris HOM05D007269 ORTHO05D008531 2.1e-21 106.7 196 36.2
Solyc03g097430.1 Solanum lycopersicum HOM05D007269 ORTHO05D008531 2.8e-21 106.3 215 38.1
TAR374G0918 Trochodendron aralioides HOM05D007269 ORTHO05D008531 2.8e-21 106.3 164 42.1
HanXRQChr08g0236471 Helianthus annuus HOM05D007269 ORTHO05D008531 3.7e-21 105.9 228 35.5
Lsat_1_v5_gn_4_82360 Lactuca sativa HOM05D007269 ORTHO05D008531 6.2e-21 105.1 205 34.1
HanXRQChr09g0273431 Helianthus annuus HOM05D007269 ORTHO05D008531 1.1e-20 104.4 200 39.0
RcHm_v2.0_Chr4g0429751 Rosa chinensis HOM05D007269 ORTHO05D008531 2.4e-20 103.2 233 36.1
Lj4g0016206 Lotus japonicus HOM05D007269 ORTHO05D008531 3.1e-20 102.8 207 34.8
Lalb_Chr07g0183561 Lupinus albus HOM05D007269 ORTHO05D008531 3.1e-20 102.8 206 35.0
MD16G1123500 Malus domestica HOM05D007269 ORTHO05D008531 4.0e-20 102.4 234 36.3
PGSC0003DMG400026484 Solanum tuberosum HOM05D007269 ORTHO05D008531 5.3e-20 102.1 225 35.1
QL03p051584 Quercus lobata HOM05D007269 ORTHO05D008531 4.5e-19 99.0 235 35.7
Thecc.02G201200 Theobroma cacao HOM05D007269 ORTHO05D008531 7.6e-19 98.2 245 35.9
TAR622G0366 Trochodendron aralioides HOM05D007269 ORTHO05D008531 7.6e-19 98.2 170 41.8
CiPaw.05G106700 Carya illinoinensis HOM05D007269 ORTHO05D008531 1.3e-18 97.4 245 35.5
CAN.G732.21 Capsicum annuum HOM05D007269 ORTHO05D008531 2.9e-18 96.3 213 38.5
HanXRQChr05g0153821 Helianthus annuus HOM05D007269 ORTHO05D008531 1.4e-17 94.0 241 32.0
ATR0582G094 Amborella trichopoda HOM05D007269 ORTHO05D008531 2.5e-17 93.2 207 37.7
CiPaw.06G105600 Carya illinoinensis HOM05D007269 ORTHO05D008531 3.2e-17 92.8 232 34.5
Sabra03G0123300 Salix brachista HOM05D007269 ORTHO05D008531 9.3e-17 91.3 220 35.0
Manes.12G008000 Manihot esculenta HOM05D007269 ORTHO05D008531 1.2e-16 90.9 212 35.4
Prupe.1G222200 Prunus persica HOM05D007269 ORTHO05D008531 2.1e-16 90.1 229 33.6
CANSAT01G1989 Cannabis sativa HOM05D007269 ORTHO05D008531 3.5e-16 89.4 233 31.3
TPR.G28777 Trifolium pratense HOM05D007269 ORTHO05D008531 6.0e-16 88.6 219 32.9
Lalb_Chr13g0297191 Lupinus albus HOM05D007269 ORTHO05D008531 7.9e-16 88.2 202 32.2
Sc22g0003750 Simmondsia chinensis HOM05D007269 ORTHO05D008531 7.9e-16 88.2 196 34.2
Potri.003G168200 Populus trichocarpa HOM05D007269 ORTHO05D008531 6.7e-15 85.1 125 44.8
FvH4_4g23360 Fragaria vesca HOM05D007269 ORTHO05D008531 8.7e-15 84.7 248 34.3
VMungo0251G2992 Vigna mungo HOM05D031312 ORTHO05D008531 8.7e-15 84.7 156 37.8
Ciclev10032794m.g Citrus clementina HOM05D007269 ORTHO05D008531 2.5e-14 83.2 192 34.9
DCAR_021637 Daucus carota HOM05D007269 ORTHO05D008531 2.5e-14 83.2 223 29.6
DCAR_021638 Daucus carota HOM05D007269 ORTHO05D008531 2.5e-14 83.2 239 29.3
Psat7g036960 Pisum sativum HOM05D007269 ORTHO05D008531 3.3e-14 82.8 213 32.4
PSO017G1627 Papaver somniferum HOM05D007269 ORTHO05D008531 1.6e-13 80.5 154 37.0
Cc11_g17250 Coffea canephora HOM05D007269 ORTHO05D008531 2.1e-13 80.1 243 32.5
MSTRG.7284 Avicennia marina HOM05D007269 ORTHO05D008531 4.8e-13 79.0 229 30.1
Dinv23173 Davidia involucrata HOM05D007269 ORTHO05D008531 6.2e-13 78.6 161 36.6
CSS0011599 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 1.1e-12 77.8 199 36.2
Migut.M01219 Erythranthe guttata HOM05D007269 ORTHO05D008531 3.1e-12 76.3 232 33.6
MBI07_g46909_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 3.1e-12 76.3 254 31.5
ECA232G3539 Erigeron canadensis HOM05D007269 ORTHO05D008531 5.3e-12 75.5 189 32.3
FAN12G4201 Fragaria x ananassa HOM05D007269 ORTHO05D008531 5.3e-12 75.5 230 34.3
CARHR257650 Cardamine hirsuta HOM05D012271 ORTHO05D014413 1.5e-11 73.9 201 30.3
CDE05G2305 Ceratophyllum demersum HOM05D007269 ORTHO05D008531 2.6e-11 73.2 194 33.0
FAN15G2538 Fragaria x ananassa HOM05D007269 ORTHO05D008531 3.4e-11 72.8 155 34.8
FAN17G1902 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.0e-10 71.2 219 32.9
Rhsim12G0177300 Rhododendron simsii HOM05D007269 ORTHO05D008531 2.2e-10 70.1 229 29.7
Zm00001eb364140 Zea mays HOM05D007269 ORTHO05D008531 3.8e-10 69.3 200 29.5
arahy.Tifrunner.gnm1.ann1.MRR6R9 Arachis hypogaea HOM05D031312 ORTHO05D008531 6.5e-10 68.6 141 38.3
Oeu001326.1 Olea europaea HOM05D007269 ORTHO05D008531 8.4e-10 68.2 198 31.8
Oeu001327.1 Olea europaea HOM05D007269 ORTHO05D008531 8.4e-10 68.2 198 31.8
Thhalv10015610m.g Eutrema salsugineum HOM05D012271 ORTHO05D014413 1.9e-09 67.0 202 31.7
AT5G50610 Arabidopsis thaliana HOM05D012271 ORTHO05D014413 3.2e-09 66.2 202 29.2
AT5G50710 Arabidopsis thaliana HOM05D012271 ORTHO05D014413 3.2e-09 66.2 202 29.2
Gohir.D01G020800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 3.2e-09 66.2 121 42.1
Gorai.002G023300 Gossypium raimondii HOM05D007269 ORTHO05D008531 3.2e-09 66.2 121 41.3
Cfa009391 Carpinus fangiana HOM05D007269 ORTHO05D008531 4.2e-09 65.9 170 35.3
Medtr8g096640 Medicago truncatula HOM05D007269 ORTHO05D008531 4.2e-09 65.9 217 29.5
AL8G24870 Arabidopsis lyrata HOM05D012271 ORTHO05D014413 7.1e-09 65.1 204 28.9
Gohir.A01G022800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 9.3e-09 64.7 121 45.5
Os01g0924200 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 9.3e-09 64.7 198 31.3
arahy.Tifrunner.gnm1.ann1.0J46GK Arachis hypogaea HOM05D031312 ORTHO05D008531 1.2e-08 64.3 142 37.3
Rhsim12G0023500 Rhododendron simsii HOM05D007269 ORTHO05D008531 3.5e-08 62.8 149 35.6
BcaB05g24038 Brassica carinata HOM05D012271 ORTHO05D014413 4.6e-08 62.4 185 29.2
Sp6g12790 Schrenkiella parvula HOM05D012271 ORTHO05D014413 7.9e-08 61.6 178 28.7
C02p20710 Brassica napus HOM05D012271 ORTHO05D014413 2.3e-07 60.1 202 30.7
BolC2t08214H Brassica oleracea HOM05D012271 ORTHO05D014413 2.3e-07 60.1 202 30.7
CsaV3_6G008060 Cucumis sativus L. HOM05D026927 ORTHO05D008531 2.3e-07 60.1 202 31.7
Migut.K01007 Erythranthe guttata HOM05D007269 ORTHO05D008531 2.3e-07 60.1 231 31.2
Zm00001eb142990 Zea mays HOM05D007269 ORTHO05D008531 2.3e-07 60.1 205 27.8
Carub.0008s1071 Capsella rubella HOM05D012271 ORTHO05D014413 3.0e-07 59.7 198 31.8
BcaC03g14639 Brassica carinata HOM05D012271 ORTHO05D014413 5.1e-07 58.9 196 31.1
Rhsim12G0176800 Rhododendron simsii HOM05D007269 ORTHO05D008531 6.7e-07 58.5 157 35.7
A02p12640 Brassica napus HOM05D012271 ORTHO05D014413 8.7e-07 58.2 196 31.1
BraA02t06322Z Brassica rapa HOM05D012271 ORTHO05D014413 8.7e-07 58.2 196 31.1
TAR629G3154 Trochodendron aralioides HOM05D007269 ORTHO05D008531 1.9e-06 57.0 144 34.7
AUR62029571 Chenopodium quinoa HOM05D054419 ORTHO05D044011 3.3e-06 56.2 156 33.3
Gohir.A03G054501 Gossypium hirsutum HOM05D037292 ORTHO05D047601 4.3e-06 55.8 95 46.3
THA.LOC104825024 Tarenaya hassleriana HOM05D012271 ORTHO05D014413 5.7e-06 55.5 193 29.5


User provided reference genes

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