Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 3.9e-165 584.7 295 100.0
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 2.1e-134 482.6 295 83.1
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 6.1e-126 454.5 295 78.3
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 9.5e-111 404.1 290 72.1
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 3.6e-110 402.1 290 72.1
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.0e-109 400.6 290 71.7
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 2.1e-89 333.2 266 59.8
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 6.2e-86 321.6 263 59.3
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.4e-85 319.7 295 55.3
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 2.4e-85 319.7 262 58.8
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.7e-83 313.5 301 54.8
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 4.9e-83 312.0 262 57.6
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 7.1e-82 308.1 302 54.3
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.2e-81 307.4 303 51.8
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.5e-81 305.8 303 53.5
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 3.5e-81 305.8 294 56.1
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 6.0e-81 305.1 266 58.3
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 3.9e-80 302.4 301 52.2
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.9e-80 302.4 301 52.2
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.6e-80 301.6 301 52.2
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 6.6e-80 301.6 298 53.4
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-79 300.1 301 51.8
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 4.3e-79 298.9 302 53.6
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.6e-79 298.5 301 51.8
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.6e-79 298.5 301 51.8
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.2e-78 297.4 282 53.5
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 4.4e-76 288.9 287 51.2
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 8.4e-75 284.6 264 55.7
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 4.2e-74 282.3 267 55.1
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 7.1e-74 281.6 295 51.2
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 1.2e-73 280.8 295 51.5
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 2.1e-73 280.0 290 53.4
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.3e-72 277.3 292 49.7
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.7e-72 276.9 255 56.9
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 3.0e-72 276.2 267 53.6
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.3e-71 272.7 290 50.0
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 7.3e-71 271.6 324 47.8
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 9.6e-71 271.2 255 52.9
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 9.6e-71 271.2 291 51.2
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 1.3e-70 270.8 261 52.5
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 3.6e-70 269.2 285 50.9
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 1.1e-69 267.7 293 48.5
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 3.1e-69 266.2 280 48.9
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.5e-68 263.8 289 48.1
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.5e-68 263.8 289 48.1
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.5e-68 263.8 289 48.1
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 4.5e-68 262.3 287 50.2
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 5.8e-68 261.9 265 48.7
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 7.6e-68 261.5 260 48.8
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.3e-67 260.8 261 51.0
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.9e-67 259.6 247 53.4
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.8e-67 259.2 251 53.4
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 4.9e-67 258.8 273 51.3
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.4e-66 255.4 240 52.5
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.1e-66 255.0 251 52.6
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 7.1e-66 255.0 264 49.6
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.6e-65 253.8 222 56.8
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 2.7e-65 253.1 226 55.3
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.7e-65 253.1 261 50.2
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.5e-65 252.7 261 49.8
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 4.6e-65 252.3 297 48.8
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 6.0e-65 251.9 236 54.2
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.0e-64 251.1 231 54.1
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.8e-64 250.4 268 49.6
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.3e-64 250.0 297 48.1
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 2.3e-64 250.0 255 51.4
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 3.0e-64 249.6 297 48.1
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 3.9e-64 249.2 275 44.0
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 6.7e-64 248.4 290 46.2
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.1e-63 247.7 266 50.0
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 1.5e-63 247.3 253 50.2
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.9e-63 246.9 264 48.9
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 3.3e-63 246.1 271 46.9
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 5.6e-63 245.4 270 48.5
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.6e-62 243.8 270 47.0
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 9.0e-61 238.0 267 48.7
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 2.6e-60 236.5 262 46.9
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 3.4e-60 236.1 252 47.2
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 4.5e-60 235.7 262 46.6
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 6.4e-59 231.9 251 50.6
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 5.5e-58 228.8 306 45.4
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 2.7e-57 226.5 256 49.6
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.8e-56 223.8 292 44.5
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 8.7e-56 221.5 302 46.0
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 8.7e-56 221.5 297 44.8
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 2.1e-54 216.9 247 45.3
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.1e-54 216.9 264 47.3
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 6.2e-54 215.3 267 45.7
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 6.2e-54 215.3 272 43.0
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.1e-53 214.5 265 46.8
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.8e-53 213.8 265 47.2
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 6.9e-53 211.8 290 42.4
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 2.6e-52 209.9 302 43.4
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 7.6e-52 208.4 265 47.9
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 1.7e-51 207.2 263 44.5
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-51 207.2 277 43.0
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.9e-51 206.5 295 41.7
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-51 206.1 277 43.7
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.4e-51 204.9 244 45.5
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.4e-51 204.9 244 45.5
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-50 204.1 244 45.1
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-50 204.1 253 45.1
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-50 203.8 244 45.1
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 2.5e-50 203.4 295 42.7
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-50 203.0 244 45.1
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-50 203.0 273 41.8
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-50 203.0 273 41.8
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-50 202.6 244 45.1
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.3e-50 201.4 277 43.3
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 2.7e-49 199.9 173 58.4
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 6.1e-49 198.7 262 44.7
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 6.1e-49 198.7 262 44.7
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.0e-48 198.0 262 44.7
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.9e-48 196.1 167 60.5
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.5e-47 194.1 260 41.5
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 2.5e-47 193.4 256 43.0
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.8e-45 187.2 223 47.1
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.1e-45 186.4 231 45.0
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.9e-45 185.3 155 60.0
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 6.5e-43 178.7 243 42.4
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.2e-41 174.5 287 38.7
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.6e-41 172.9 200 47.0
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-40 171.4 216 44.4
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.4e-40 171.0 220 43.2
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-40 170.6 164 51.2
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-39 167.5 193 45.1
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 6.3e-38 162.2 273 39.9
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.4e-37 161.0 248 40.7
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 2.4e-37 160.2 252 40.1
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 5.3e-37 159.1 248 40.7
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 5.9e-36 155.6 193 43.5
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.1e-33 147.1 203 41.9
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.4e-32 144.4 259 34.4
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.0e-31 140.6 123 60.2
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-26 122.9 146 45.9
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 6.1e-25 119.0 173 38.7
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.2e-24 115.9 136 46.3
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 2.8e-22 110.2 203 32.5
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 2.1e-17 94.0 207 30.4
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 3.0e-16 90.1 101 45.5
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 2.0e-15 87.4 199 30.2
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 2.4e-13 80.5 88 44.3
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 2.2e-11 73.9 151 34.4
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 8.8e-08 62.0 90 32.2


User provided reference genes

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