Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 2050.0 1096 100.0
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1649.8 1136 77.8
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1646.3 1136 77.9
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1641.7 1176 77.4
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1627.5 1137 77.5
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1256.5 1146 58.5
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1245.7 1137 62.1
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1234.6 1145 60.3
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1229.9 1141 60.3
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1226.8 1139 59.6
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1217.6 1152 58.3
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1214.9 1130 59.1
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1210.7 1150 58.6
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1207.6 1140 59.6
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1206.8 1149 58.4
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1201.4 1138 57.9
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1198.3 1224 54.7
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1195.6 1148 57.7
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1190.6 1144 57.5
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1188.7 1152 57.6
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1186.0 1152 57.6
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1184.5 1150 57.5
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1183.7 1131 56.1
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1180.6 1144 56.9
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1180.2 1141 57.7
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1179.1 1150 56.8
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1176.4 1148 57.9
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1174.1 1020 59.4
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1163.3 1136 55.9
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1162.1 1136 56.4
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1159.1 1137 56.3
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1155.6 1138 56.2
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1153.7 1182 55.2
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1149.8 1020 58.3
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1149.8 1137 57.1
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1149.4 1148 55.1
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1149.0 1145 55.9
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1142.9 1136 55.8
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1141.3 1130 56.3
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1137.9 1191 53.6
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1135.6 1135 54.9
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1130.2 1148 54.2
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1126.3 1025 59.1
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1123.6 1148 54.3
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1120.5 1142 53.8
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1119.0 1158 55.2
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1115.1 1128 54.9
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1114.8 882 64.3
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1112.1 1140 53.5
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1108.6 1127 53.4
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1100.5 1157 53.2
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1099.3 1142 53.7
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1095.1 1125 53.8
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1090.1 1126 53.5
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1087.0 1138 53.6
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1084.7 1131 53.7
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1084.7 1132 54.3
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1078.9 1161 51.7
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1078.9 1123 53.4
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1076.6 1125 52.8
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1075.1 1030 58.2
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 7.5e-312 1073.5 1331 49.7
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 5.2e-311 1071.2 1131 53.8
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 9.0e-311 1070.5 1125 53.7
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 9.0e-311 1070.5 1125 53.7
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 1.1e-308 1063.5 1606 43.5
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 4.1e-308 1061.6 1143 53.3
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 5.3e-308 1061.2 1136 53.4
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 3.0e-303 1045.4 1016 56.6
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 4.4e-302 1041.6 1121 52.6
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 2.9e-298 1028.9 1141 51.6
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 1.4e-297 1026.5 1174 51.6
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 1.2e-296 1023.5 1022 52.4
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 2.1e-296 1022.7 1143 51.4
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 7.9e-296 1020.8 998 55.3
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 1.5e-294 1016.5 1111 52.3
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 1.3e-293 1013.4 1127 50.6
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 2.7e-288 995.7 1029 54.9
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 4.0e-287 991.9 1130 50.3
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 4.5e-283 978.4 1131 50.8
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 4.2e-281 971.8 1130 49.5
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 5.0e-266 921.8 1023 49.4
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 5.4e-260 901.7 1205 45.5
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 6.6e-258 894.8 672 69.6
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 1.1e-257 894.0 948 51.9
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 3.5e-251 872.5 1021 47.8
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 1.7e-242 843.6 1125 45.3
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.4e-231 806.6 802 56.5
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 2.2e-229 800.0 1135 43.0
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 2.4e-223 780.0 1017 45.6
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.5e-219 766.1 662 61.0
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 6.0e-219 765.4 661 61.0
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 5.1e-218 762.3 1050 42.3
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 1.9e-212 743.8 734 54.2
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 6.0e-211 738.8 755 54.2
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.3e-210 736.9 718 53.3
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 7.0e-183 645.6 634 53.2
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 4.8e-176 622.9 492 64.0
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 4.2e-156 556.6 1044 35.4
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.8e-154 551.2 984 35.8
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 9.5e-148 528.9 1017 33.4
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.9e-135 488.0 1056 32.5
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.4e-129 467.2 1042 32.0
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 7.1e-119 433.0 433 55.2
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 3.9e-93 347.4 1215 26.3
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 5.1e-85 320.5 397 50.6
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 2.8e-38 165.2 116 64.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.8e-36 156.8 167 45.5
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 1.0e-24 120.2 271 31.0
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.8e-21 109.4 178 39.9
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 3.4e-12 78.6 71 53.5
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.3e-11 76.6 40 90.0
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 8.6e-08 63.9 37 73.0
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 1.9e-07 62.8 47 59.6
Thecc.02G342000 Theobroma cacao HOM05D006302 ORTHO05D007960 3.3e-07 62.0 39 74.4
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 8.1e-06 57.4 74 45.9


User provided reference genes

Program Settings