Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 8.1e-299 1029.6 518 100.0
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.9e-268 928.7 527 89.8
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 2.8e-267 924.9 518 88.8
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.4e-266 922.5 518 88.8
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 4.5e-265 917.5 513 88.7
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 3.8e-248 861.3 516 83.5
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 2.7e-230 802.0 512 77.9
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 3.6e-230 801.6 508 77.6
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 7.0e-226 787.3 513 76.6
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 2.7e-225 785.4 511 77.1
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 2.9e-224 781.9 508 75.6
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 6.5e-224 780.8 508 75.6
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 8.5e-224 780.4 509 76.6
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 5.5e-223 777.7 513 76.8
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 1.0e-221 773.5 508 74.8
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.8e-221 772.7 516 76.6
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 3.0e-221 771.9 512 76.8
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 4.0e-221 771.5 508 75.0
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 8.8e-221 770.4 519 73.2
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 2.0e-220 769.2 509 75.4
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 2.6e-220 768.8 507 73.8
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 7.5e-220 767.3 505 75.2
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 3.7e-219 765.0 508 75.8
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 6.3e-219 764.2 519 73.6
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.1e-218 763.5 513 75.4
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 5.4e-218 761.1 564 69.5
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 9.2e-218 760.4 508 75.2
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 3.5e-217 758.4 514 74.1
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 3.5e-217 758.4 507 73.8
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 4.5e-217 758.1 507 73.4
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.9e-216 755.4 508 73.0
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 3.8e-216 755.0 513 74.9
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 4.3e-215 751.5 515 72.8
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 1.6e-214 749.6 504 73.0
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 2.8e-214 748.8 528 71.2
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 2.8e-214 748.8 510 73.5
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 8.0e-214 747.3 507 72.2
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.8e-213 746.1 513 73.5
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 1.5e-212 743.0 510 72.7
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 2.0e-212 742.7 508 74.0
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 1.7e-211 739.6 513 73.3
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.2e-211 739.2 513 72.9
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 3.7e-211 738.4 510 72.4
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.9e-211 738.0 513 73.3
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.4e-210 734.6 513 72.5
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 4.6e-209 731.5 488 74.6
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 5.9e-209 731.1 509 71.1
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 4.3e-207 724.9 514 70.2
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 7.3e-207 724.2 509 70.9
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.1e-205 718.8 507 69.4
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 5.2e-205 718.0 508 70.3
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 2.6e-204 715.7 592 63.7
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 5.8e-204 714.5 508 68.9
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 1.4e-202 709.9 524 69.7
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 5.0e-200 701.4 512 69.7
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 3.3e-199 698.7 510 69.8
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 5.6e-199 698.0 508 68.1
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 1.6e-198 696.4 507 70.4
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.6e-198 695.3 528 68.0
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 2.3e-197 692.6 508 68.7
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 4.0e-197 691.8 534 66.9
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 5.2e-197 691.4 536 66.4
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 3.7e-195 685.3 512 67.0
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 6.4e-195 684.5 519 67.6
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.4e-194 683.3 527 65.3
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 1.6e-193 679.9 509 68.8
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 2.1e-193 679.5 564 64.0
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 6.2e-190 667.9 524 65.8
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.1e-189 667.2 517 66.5
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.2e-188 663.7 517 66.3
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.2e-188 663.7 517 66.3
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.2e-188 663.7 517 66.3
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.5e-188 663.3 517 66.2
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 6.0e-185 651.4 540 60.6
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 8.6e-184 647.5 394 81.7
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.2e-182 643.7 519 61.7
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.8e-181 639.8 462 69.5
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 4.4e-180 635.2 502 64.1
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 2.2e-179 632.9 522 61.3
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 3.8e-179 632.1 539 61.6
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 6.4e-179 631.3 458 69.2
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 4.2e-178 628.6 513 59.6
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 7.1e-178 627.9 555 63.2
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 1.6e-177 626.7 546 60.4
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.7e-177 625.9 498 64.9
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 2.7e-169 599.4 508 62.2
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 4.9e-163 578.6 403 71.7
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.4e-163 577.8 365 78.1
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.5e-156 557.0 509 57.4
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 2.1e-150 536.6 354 74.3
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 9.7e-135 484.6 381 67.7
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 5.2e-128 462.2 514 52.9
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 6.3e-126 455.3 473 56.2
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 9.1e-125 451.4 275 78.9
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 3.6e-113 412.9 550 44.7
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 2.8e-110 403.3 539 42.7
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 3.1e-109 399.8 513 42.1
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.4e-109 399.1 494 47.8
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.0e-99 368.2 255 70.6
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 1.9e-98 364.0 255 73.3
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.2e-89 334.7 261 64.8
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 8.3e-86 322.0 556 35.4
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 1.3e-83 314.7 204 75.0
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.1e-80 305.1 235 68.5
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.7e-78 297.7 184 79.3
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.5e-74 284.6 241 58.5
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.2e-73 281.6 460 42.0
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 5.2e-72 276.2 222 65.3
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 8.7e-67 258.8 258 46.5
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 7.8e-60 235.7 247 49.8
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.9e-58 231.1 221 57.5
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 9.9e-55 218.8 471 31.0
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 7.4e-50 202.6 148 66.9
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.3e-46 191.8 248 48.4
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 4.9e-46 189.9 172 55.8
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 1.5e-42 178.3 299 38.8
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 9.0e-40 169.1 186 47.8
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 7.6e-39 166.0 257 42.8
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 2.3e-35 154.5 504 27.4
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 3.7e-33 147.1 81 85.2
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 2.6e-31 141.0 103 63.1
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 9.1e-24 115.9 116 52.6
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.2e-23 115.5 182 39.6
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.0e-23 114.8 101 60.4
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 3.2e-21 107.5 126 50.0
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 7.2e-21 106.3 121 49.6
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 2.6e-18 97.8 185 36.8
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 1.2e-12 79.0 92 47.8
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 2.1e-12 78.2 52 59.6
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.7e-09 68.6 70 52.9
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 7.7e-07 59.7 66 48.5
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 1.0e-06 59.3 65 50.8


User provided reference genes

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