Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0922 Durio zibethinus HOM05D007599 ORTHO05D009548 3.3e-40 167.9 85 100.0
Lsat_1_v5_gn_3_11180 Lactuca sativa HOM05D007599 ORTHO05D009548 1.9e-24 115.5 89 68.5
HanXRQChr17g0534931 Helianthus annuus HOM05D007599 ORTHO05D009548 1.4e-22 109.4 88 65.9
Sc07g0010220 Simmondsia chinensis HOM05D007599 ORTHO05D009548 3.1e-22 108.2 77 68.8
ClCG01G001340 Citrullus lanatus HOM05D007599 ORTHO05D009548 5.3e-22 107.5 75 72.0
Oeu029803.1 Olea europaea HOM05D007599 ORTHO05D009548 5.3e-22 107.5 88 64.8
Sopen10g024670 Solanum pennellii HOM05D007599 ORTHO05D009548 5.3e-22 107.5 89 60.7
Sed0012861 Sechium edule HOM05D007599 ORTHO05D009548 3.4e-21 104.8 81 65.4
GSVIVG01019698001 Vitis vinifera HOM05D007599 ORTHO05D009548 3.4e-21 104.8 90 63.3
unitig_62.g23260 Utricularia gibba HOM05D007599 ORTHO05D009548 1.7e-20 102.4 88 61.4
EL10Ac5g12394 Beta vulgaris HOM05D007599 ORTHO05D009548 2.9e-20 101.7 79 65.8
Thhalv10019387m.g Eutrema salsugineum HOM05D007599 ORTHO05D009548 6.5e-20 100.5 66 72.7
Os02g0682600 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 6.5e-20 100.5 86 62.8
AL2G14680 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 1.4e-19 99.4 72 66.7
PGSC0003DMG400012109 Solanum tuberosum HOM05D007599 ORTHO05D009548 1.4e-19 99.4 87 58.6
MSTRG.12224 Avicennia marina HOM05D007599 ORTHO05D009548 1.9e-19 99.0 78 61.5
Solyc08g083380.2 Solanum lycopersicum HOM05D007599 ORTHO05D009548 2.5e-19 98.6 89 57.3
MELO3C005802.2 Cucumis melo HOM05D007599 ORTHO05D009548 3.2e-19 98.2 81 64.2
CsaV3_5G001470 Cucumis sativus L. HOM05D007599 ORTHO05D009548 3.2e-19 98.2 81 64.2
Gohir.A12G242400 Gossypium hirsutum HOM05D007599 ORTHO05D009548 7.1e-19 97.1 88 62.5
AUR62007084 Chenopodium quinoa HOM05D007599 ORTHO05D009548 3.5e-18 94.7 78 60.3
AUR62019947 Chenopodium quinoa HOM05D007599 ORTHO05D009548 3.5e-18 94.7 78 60.3
Atru.chr9.1835 Acer truncatum HOM05D007599 ORTHO05D009548 7.9e-18 93.6 86 58.1
FAN18G2966 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.0e-17 93.2 103 49.5
FAN08G0537 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.8e-17 92.4 74 52.7
Mapoly0015s0046 Marchantia polymorpha HOM05D007599 ORTHO05D009548 1.8e-17 92.4 78 57.7
FvH4_5g07140 Fragaria vesca HOM05D007599 ORTHO05D009548 3.0e-17 91.7 81 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1837 Anthoceros agrestis HOM05D007599 ORTHO05D009548 1.1e-16 89.7 66 63.6
Ciclev10023088m.g Citrus clementina HOM05D007599 ORTHO05D009548 2.5e-16 88.6 84 53.6
FAN13G2393 Fragaria x ananassa HOM05D007599 ORTHO05D009548 5.7e-16 87.4 74 52.7
Pp3c25_10700 Physcomitrium patens HOM05D007599 ORTHO05D009548 1.1e-14 83.2 71 57.7
RcHm_v2.0_Chr7g0187811 Rosa chinensis HOM05D007599 ORTHO05D009548 2.4e-14 82.0 81 53.1
Actinidia22230 Actinidia chinensis HOM05D007599 ORTHO05D009548 3.1e-14 81.6 88 54.5
Rhsim02G0254600 Rhododendron simsii HOM05D007599 ORTHO05D009548 4.1e-14 81.3 51 76.5
SGA_v2.0_scaffold88G27242 Striga asiatica HOM05D007599 ORTHO05D009548 5.3e-14 80.9 117 41.0
FAN08G0181 Fragaria x ananassa HOM05D007599 ORTHO05D009548 6.9e-14 80.5 136 37.5
TPR.G21312 Trifolium pratense HOM05D007599 ORTHO05D009548 1.5e-13 79.3 81 49.4
MCO15G174 Micromonas commoda HOM05D007599 ORTHO05D009548 3.4e-13 78.2 58 56.9
Sabra16G0305100 Salix brachista HOM05D007599 ORTHO05D009548 3.4e-13 78.2 82 54.9
Migut.E00717 Erythranthe guttata HOM05D007599 ORTHO05D009548 1.3e-12 76.3 67 56.7
PRCOL_00005458 Prasinoderma coloniale HOM05D007599 ORTHO05D009548 2.2e-12 75.5 63 46.0
Os01g0932550 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 2.9e-12 75.1 51 72.5
FvH4_5g10420 Fragaria vesca HOM05D007599 ORTHO05D009548 6.5e-12 73.9 75 50.7
Cre16.g650800 Chlamydomonas reinhardtii HOM05D007599 ORTHO05D009548 3.2e-11 71.6 72 41.7
CAN.G567.112 Capsicum annuum HOM05D007599 ORTHO05D009548 5.5e-11 70.9 85 45.9
SHI06900 Sapria himalayana HOM05D007599 ORTHO05D009548 5.5e-11 70.9 44 72.7
AT1G61570 Arabidopsis thaliana HOM05D007599 ORTHO05D009548 2.1e-10 68.9 88 43.2
COL.COLO4_10843 Corchorus olitorius HOM05D007599 ORTHO05D009548 3.6e-10 68.2 92 43.5
Gohir.D12G243500 Gossypium hirsutum HOM05D007599 ORTHO05D009548 1.4e-09 66.2 88 48.9
Gorai.008G260900 Gossypium raimondii HOM05D007599 ORTHO05D009548 1.4e-09 66.2 88 48.9
AagrBONN_evm.TU.Sc2ySwM_344.1292 Anthoceros agrestis HOM05D007599 ORTHO05D009548 8.8e-09 63.5 75 44.0
Rhsim07G0075900 Rhododendron simsii HOM05D007599 ORTHO05D009548 1.1e-08 63.2 87 43.7
CDE11G1025 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 1.5e-08 62.8 85 43.5
Duzib068G0772 Durio zibethinus HOM05D007599 ORTHO05D009548 1.9e-08 62.4 84 46.4
FAN04G0849 Fragaria x ananassa HOM05D007599 ORTHO05D009548 2.5e-08 62.0 75 44.0
FAN13G0770 Fragaria x ananassa HOM05D007599 ORTHO05D009548 2.5e-08 62.0 75 45.3
AL1G56360 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 3.3e-08 61.6 37 75.7
Haze_27758 Corylus avellana HOM05D007599 ORTHO05D009548 5.7e-08 60.8 72 37.5
CANSAT21G1781 Cannabis sativa HOM05D007599 ORTHO05D009548 1.7e-07 59.3 75 44.0
CDE09G0527 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 2.2e-07 58.9 79 41.8
Manes.02G000300 Manihot esculenta HOM05D007599 ORTHO05D009548 4.1e-06 54.7 86 41.9
CiPaw.12G074700 Carya illinoinensis HOM05D007599 ORTHO05D009548 5.3e-06 54.3 75 40.0
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 5.3e-06 54.3 86 36.0
Cc08_g17030 Coffea canephora HOM05D007599 ORTHO05D009548 9.1e-06 53.5 77 37.7
Sp5g30310 Schrenkiella parvula HOM05D007599 ORTHO05D009548 9.1e-06 53.5 66 42.4


User provided reference genes

Program Settings