Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 3.5e-108 394.8 179 100.0
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.5e-90 336.3 162 94.4
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.8e-89 332.0 162 92.0
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.6e-87 325.5 162 91.4
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 4.4e-87 324.7 162 90.7
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 4.4e-87 324.7 163 90.8
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 1.1e-85 320.1 162 90.7
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 7.1e-85 317.4 173 83.8
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.3e-83 313.2 162 88.3
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.9e-83 311.6 162 85.8
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.9e-83 311.6 162 85.2
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.7e-83 310.5 162 85.8
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.1e-82 310.1 161 86.3
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.5e-82 309.7 162 87.7
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.9e-82 309.3 162 84.6
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 5.6e-82 307.8 162 85.2
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.3e-81 306.6 162 82.1
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 6.2e-81 304.3 162 85.2
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.1e-80 303.5 161 83.2
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.4e-80 303.1 162 85.2
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.4e-80 303.1 162 82.7
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 2.4e-80 302.4 162 83.3
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 2.4e-80 302.4 160 85.0
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 4.0e-80 301.6 163 84.0
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 4.0e-80 301.6 162 84.0
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 5.3e-80 301.2 162 84.0
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 5.3e-80 301.2 162 81.5
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 6.9e-80 300.8 162 84.0
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 9.0e-80 300.4 162 84.0
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.2e-79 300.1 162 85.2
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.2e-79 300.1 162 85.2
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.2e-79 300.1 155 86.5
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 4.4e-79 298.1 162 79.0
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 4.4e-79 298.1 162 80.9
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 2.9e-78 295.4 162 79.6
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 2.9e-78 295.4 162 79.6
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 3.8e-78 295.0 162 82.1
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.1e-77 293.5 162 82.7
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.4e-77 293.1 162 81.5
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.9e-77 292.7 162 80.2
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.4e-77 292.4 162 83.3
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 3.2e-77 292.0 162 81.5
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.2e-77 292.0 162 81.5
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.2e-77 292.0 162 81.5
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 4.2e-77 291.6 162 77.2
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.4e-77 291.2 162 80.9
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.1e-77 290.8 162 80.9
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.2e-76 290.0 162 82.1
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.2e-76 290.0 163 81.6
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 4.6e-76 288.1 162 81.5
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 6.0e-76 287.7 162 80.2
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 6.0e-76 287.7 162 81.5
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 7.8e-76 287.3 163 80.4
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 7.8e-76 287.3 162 80.9
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.0e-75 287.0 164 79.3
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 3.0e-75 285.4 162 79.6
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 6.6e-75 284.3 162 76.5
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 8.7e-75 283.9 163 81.0
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.9e-74 282.7 163 81.0
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.9e-74 282.7 163 81.6
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.9e-74 282.7 163 80.4
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 2.5e-74 282.3 170 77.1
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 3.3e-74 282.0 199 67.8
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.6e-73 279.6 162 77.8
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.6e-73 279.6 160 75.6
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.1e-73 279.3 162 80.9
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 2.1e-73 279.3 177 72.3
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.8e-73 278.9 163 81.0
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.8e-73 278.9 162 79.6
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 4.8e-73 278.1 164 76.2
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 6.2e-73 277.7 162 77.2
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 8.1e-73 277.3 162 77.8
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 1.1e-72 276.9 162 77.8
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.1e-72 276.9 163 80.4
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.4e-72 276.6 164 75.6
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.4e-72 276.6 164 75.6
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.4e-72 275.8 163 76.1
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 3.1e-72 275.4 164 75.0
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 3.1e-72 275.4 162 79.0
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 4.0e-72 275.0 163 74.8
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.2e-71 273.5 162 74.7
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.2e-71 273.5 163 76.1
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.6e-71 272.3 162 77.2
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 5.8e-71 271.2 164 73.8
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 5.8e-71 271.2 161 73.3
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.7e-70 269.6 168 75.6
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.7e-70 269.6 163 73.6
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.7e-70 269.6 162 74.7
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.2e-70 269.2 161 74.5
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.9e-70 268.1 168 75.6
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 8.4e-70 267.3 162 74.1
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 3.2e-69 265.4 155 74.8
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.6e-68 263.1 136 87.5
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.6e-68 263.1 162 74.7
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.7e-68 262.3 161 70.8
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 7.9e-68 260.8 162 71.6
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 7.9e-68 260.8 162 71.6
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.0e-67 260.4 132 84.1
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.3e-67 260.0 186 65.6
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.3e-67 260.0 164 70.7
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.8e-67 259.6 182 65.9
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 3.0e-67 258.8 141 80.9
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 3.0e-67 258.8 161 68.3
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 5.1e-67 258.1 173 69.9
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 6.7e-67 257.7 162 71.6
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 6.7e-67 257.7 162 71.0
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.1e-66 256.9 181 68.0
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.1e-66 256.9 162 69.8
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 7.4e-66 254.2 161 68.9
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 3.7e-65 251.9 162 69.8
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 4.8e-65 251.5 161 68.3
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.8e-65 251.5 195 61.0
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 2.4e-64 249.2 160 70.6
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.1e-64 248.8 132 81.1
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 4.0e-64 248.4 173 68.8
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 5.3e-64 248.1 163 72.4
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.0e-62 243.8 138 71.7
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 4.6e-60 235.0 132 77.3
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 4.6e-60 235.0 143 69.2
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 7.9e-60 234.2 138 76.1
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.0e-59 233.8 161 63.4
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 8.7e-59 230.7 127 73.2
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 3.3e-58 228.8 164 64.6
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.4e-58 227.6 129 71.3
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.8e-57 225.7 132 69.7
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 4.5e-55 218.4 126 73.8
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.7e-54 216.5 147 69.4
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.9e-53 213.0 116 79.3
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 5.5e-53 211.5 125 75.2
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 7.9e-52 207.6 113 80.5
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 5.1e-51 204.9 126 74.6
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.6e-47 192.6 112 75.0
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.1e-44 183.0 127 58.3
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.8e-35 153.3 105 73.3
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 3.8e-30 135.6 73 79.5
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.2e-25 119.8 67 73.1
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 4.5e-23 112.1 79 64.6
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.0e-18 96.7 49 85.7
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 4.4e-18 95.5 127 40.2
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 2.0e-15 86.7 85 50.6
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.0e-14 82.0 48 66.7
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 6.5e-14 81.6 52 71.2
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 8.5e-14 81.3 43 74.4
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 2.6e-10 69.7 52 61.5
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 4.4e-10 68.9 35 82.9
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 6.3e-09 65.1 50 62.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 9.1e-08 61.2 50 56.0
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 5.9e-07 58.5 82 42.7


User provided reference genes

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