Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 1.1e-189 666.4 321 100.0
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 3.7e-153 545.0 323 83.9
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 4.9e-153 544.7 323 83.9
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 8.3e-153 543.9 321 83.5
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 9.2e-144 513.8 320 79.7
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 1.9e-128 463.0 323 71.2
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 6.0e-127 458.0 316 71.8
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 6.0e-127 458.0 314 71.3
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 1.3e-126 456.8 288 77.8
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 3.0e-126 455.7 276 80.4
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 6.7e-126 454.5 314 70.7
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 2.5e-125 452.6 293 76.1
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 2.5e-125 452.6 293 75.8
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 2.8e-124 449.1 276 79.3
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 4.8e-124 448.4 285 77.5
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 8.1e-124 447.6 272 79.8
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 1.1e-123 447.2 275 78.9
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 1.8e-123 446.4 276 80.1
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 3.1e-123 445.7 326 68.7
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 5.3e-123 444.9 286 77.6
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 1.5e-122 443.4 275 78.5
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 2.0e-122 443.0 326 67.8
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 3.4e-122 442.2 290 75.2
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 4.5e-122 441.8 276 79.0
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 4.5e-122 441.8 299 73.6
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 5.8e-122 441.4 267 79.8
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 7.6e-122 441.0 315 69.8
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 9.9e-122 440.7 272 80.5
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 1.7e-121 439.9 264 81.4
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.2e-121 439.5 315 69.5
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 2.9e-121 439.1 315 69.5
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 3.8e-121 438.7 320 69.1
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 3.8e-121 438.7 276 77.2
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 6.4e-121 438.0 277 78.7
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 6.4e-121 438.0 323 68.1
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 6.4e-121 438.0 276 77.5
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 8.4e-121 437.6 282 78.0
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.4e-120 436.8 276 76.1
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 2.5e-120 436.0 320 70.0
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 2.5e-120 436.0 301 73.4
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 3.2e-120 435.6 272 77.9
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 4.2e-120 435.3 271 77.5
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 5.5e-120 434.9 287 75.3
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 9.3e-120 434.1 275 76.4
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 9.3e-120 434.1 280 76.8
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 9.3e-120 434.1 270 79.6
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.2e-119 433.7 277 75.8
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 1.6e-119 433.3 267 79.8
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 6.0e-119 431.4 276 75.7
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 1.8e-118 429.9 284 74.3
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 1.8e-118 429.9 279 75.3
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 1.8e-118 429.9 275 75.6
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 2.3e-118 429.5 276 75.0
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 8.7e-118 427.6 276 75.4
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 1.1e-117 427.2 262 78.6
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 3.3e-117 425.6 276 74.6
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 7.4e-117 424.5 276 74.6
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 7.4e-117 424.5 276 75.7
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 2.8e-116 422.5 276 74.6
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 4.8e-116 421.8 275 76.4
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 3.1e-115 419.1 297 70.4
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 3.1e-115 419.1 276 75.0
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 2.0e-114 416.4 287 73.2
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 2.0e-114 416.4 264 75.8
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 2.0e-114 416.4 250 78.0
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 4.5e-114 415.2 276 73.6
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 5.8e-114 414.8 288 71.5
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 1.3e-113 413.7 266 76.7
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 8.4e-113 411.0 268 76.9
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 1.4e-112 410.2 266 74.4
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 2.5e-112 409.5 245 81.2
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 1.3e-110 403.7 260 75.8
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 5.7e-109 398.3 308 66.2
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 1.6e-108 396.7 268 74.3
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 5.9e-106 388.3 226 83.2
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 7.2e-104 381.3 276 69.6
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 2.7e-103 379.4 271 69.0
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 4.5e-98 362.1 276 68.8
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 2.9e-97 359.4 241 75.9
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 8.5e-97 357.8 224 79.9
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 1.5e-93 347.1 249 65.9
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 2.0e-93 346.7 211 78.2
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 5.7e-93 345.1 203 80.3
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 3.8e-89 332.4 262 61.8
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 1.4e-88 330.5 232 70.3
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 8.8e-86 321.2 249 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 3.7e-76 289.3 221 62.0
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 3.1e-75 286.2 220 62.3
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 6.3e-68 261.9 245 60.4
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 6.3e-68 261.9 245 60.4
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.6e-66 257.3 163 78.5
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 8.6e-65 251.5 170 74.7
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 8.6e-65 251.5 153 81.7
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 5.9e-58 228.8 135 74.8
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 2.6e-53 213.4 236 50.0
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 8.3e-52 208.4 282 42.9
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.1e-46 191.4 270 41.9
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 1.3e-44 184.5 293 36.5
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 1.1e-40 171.4 118 74.6
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 4.3e-40 169.5 112 71.4
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 1.4e-38 164.5 98 79.6
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 6.8e-38 162.2 148 62.8
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 3.7e-36 156.4 79 87.3
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 2.3e-25 120.6 97 60.8
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 3.0e-25 120.2 264 30.7
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 3.9e-25 119.8 281 29.9
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 5.4e-19 99.4 128 48.4
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 7.1e-19 99.0 77 62.3
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.1e-11 75.1 342 23.7
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 2.4e-11 73.9 280 25.7
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 3.2e-11 73.6 280 25.4
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 5.4e-11 72.8 280 25.7
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 7.1e-11 72.4 280 27.1
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.2e-10 71.6 280 25.0
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.6e-10 71.2 280 27.1
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 3.5e-10 70.1 280 25.7
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 3.5e-10 70.1 280 25.4
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 3.5e-10 70.1 252 23.4
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 4.6e-10 69.7 280 24.6
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 4.6e-10 69.7 280 24.6
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 6.0e-10 69.3 283 27.2
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 6.0e-10 69.3 286 25.5
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 6.0e-10 69.3 284 25.7
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 7.9e-10 68.9 281 24.9
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 7.9e-10 68.9 280 24.6
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 7.9e-10 68.9 280 25.7
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.0e-09 68.6 280 26.8
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.0e-09 68.6 280 24.6
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.3e-09 68.2 280 26.4
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.3e-09 68.2 280 25.0
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.8e-09 67.8 280 23.9
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 1.8e-09 67.8 280 24.6
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 1.8e-09 67.8 280 25.7
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 2.3e-09 67.4 280 25.7
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 3.9e-09 66.6 280 25.0
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 5.1e-09 66.2 280 25.0
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 5.1e-09 66.2 243 25.9
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 6.7e-09 65.9 252 23.4
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.1e-08 65.1 283 26.1
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 1.5e-08 64.7 280 25.7
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 3.3e-08 63.5 260 21.9
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 4.3e-08 63.2 287 24.0
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 5.6e-08 62.8 239 25.1
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 5.6e-08 62.8 264 23.1
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 7.4e-08 62.4 280 24.3
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 1.3e-07 61.6 247 24.3
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.6e-07 61.2 235 23.8
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.6e-07 61.2 257 23.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 2.1e-07 60.8 252 22.6
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 2.1e-07 60.8 249 25.3
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.1e-07 60.8 252 23.8
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 2.1e-07 60.8 252 23.8
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 2.8e-07 60.5 254 21.3
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 3.7e-07 60.1 229 24.0
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 4.8e-07 59.7 276 23.9
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 4.8e-07 59.7 276 23.9
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 6.2e-07 59.3 233 24.9
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 6.2e-07 59.3 252 21.8
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 6.2e-07 59.3 233 24.5
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 8.1e-07 58.9 251 23.1
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 8.1e-07 58.9 251 22.7
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 8.1e-07 58.9 253 22.9
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 1.1e-06 58.5 254 23.2
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.1e-06 58.5 44 68.2
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 1.8e-06 57.8 233 24.5
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 1.8e-06 57.8 263 23.2
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.0e-06 56.6 233 24.0
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 4.0e-06 56.6 232 22.4


User provided reference genes

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