Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.0e-134 483.4 246 100.0
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 4.3e-117 424.9 246 88.2
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.2e-114 416.8 247 87.0
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.8e-113 411.8 246 86.2
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.0e-113 411.4 246 86.2
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 8.4e-113 410.6 246 85.4
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.4e-112 409.8 246 85.8
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 3.0e-110 402.1 264 80.7
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-109 400.2 246 82.1
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 7.4e-109 397.5 246 81.7
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.8e-108 395.6 246 81.3
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.5e-104 382.5 246 78.0
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.2e-98 363.6 248 76.2
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.5e-98 363.2 246 76.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 2.6e-98 362.5 249 75.5
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.3e-97 360.1 248 76.6
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.2e-97 359.4 249 75.1
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.0e-97 358.2 254 75.2
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 7.2e-96 354.4 249 75.5
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 7.2e-96 354.4 249 75.5
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 6.1e-95 351.3 248 75.4
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 7.9e-95 350.9 248 73.0
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 7.9e-95 350.9 247 74.9
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 7.9e-95 350.9 246 74.4
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 7.9e-95 350.9 246 73.2
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.0e-94 350.5 250 74.0
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.0e-94 349.0 249 73.9
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 3.9e-94 348.6 247 73.3
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.9e-94 348.6 246 72.8
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 5.1e-94 348.2 249 74.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.5e-93 346.7 248 73.0
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.5e-93 346.7 248 74.2
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.0e-93 346.3 251 71.3
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.6e-93 345.9 250 74.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.4e-93 345.1 248 73.8
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 7.4e-93 344.4 246 72.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.3e-92 343.6 249 73.1
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.3e-92 343.6 246 72.8
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.7e-92 343.2 248 72.2
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.7e-92 343.2 248 73.4
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.8e-92 342.4 256 71.1
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 4.8e-92 341.7 245 73.5
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.4e-91 340.1 251 69.3
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 7.0e-91 337.8 251 71.7
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 9.1e-91 337.4 246 73.6
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.6e-90 336.7 246 72.0
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.0e-90 336.3 247 71.7
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 4.5e-90 335.1 257 70.0
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.7e-89 333.2 250 70.8
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.2e-89 332.8 249 70.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.9e-89 332.4 251 71.7
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.5e-88 329.3 249 70.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 3.2e-88 328.9 248 71.4
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 5.5e-88 328.2 249 69.9
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 9.4e-88 327.4 248 70.2
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.6e-87 326.6 248 70.2
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 2.1e-87 326.2 249 68.3
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.1e-87 326.2 248 70.6
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.7e-87 325.9 248 70.2
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.7e-87 325.9 248 70.2
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.7e-87 325.9 248 70.2
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.7e-87 325.9 241 69.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 8.0e-87 324.3 250 70.8
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 8.0e-87 324.3 245 68.6
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.0e-86 323.9 252 68.3
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.4e-86 323.6 244 69.7
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.8e-86 323.2 248 68.1
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.8e-86 323.2 244 70.1
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.3e-86 322.8 249 68.7
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.3e-86 322.8 244 69.3
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.3e-86 322.8 252 71.0
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.0e-86 322.4 249 68.3
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.0e-86 322.4 249 69.1
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.0e-86 322.0 248 69.8
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 6.7e-86 321.2 215 75.3
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.8e-86 320.9 237 70.9
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-85 320.5 247 69.2
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.5e-85 320.1 243 71.2
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.6e-85 319.3 237 70.9
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.3e-85 318.9 249 67.9
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 4.4e-85 318.5 256 68.8
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.3e-84 317.0 248 66.1
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.3e-84 317.0 243 67.1
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.2e-84 316.2 253 68.8
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.2e-84 316.2 249 66.7
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.8e-84 315.8 246 67.1
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 2.8e-84 315.8 312 58.0
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.8e-84 315.8 247 66.0
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 6.3e-84 314.7 248 66.5
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.4e-83 313.5 248 65.3
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.8e-83 313.2 249 66.3
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.8e-83 313.2 253 66.4
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.4e-83 312.8 247 66.4
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.4e-83 312.8 253 65.2
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 4.1e-83 312.0 255 67.5
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 5.3e-83 311.6 249 65.5
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 7.0e-83 311.2 237 71.3
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.2e-82 310.5 247 65.6
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.5e-82 308.9 247 64.8
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 7.7e-82 307.8 248 66.1
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 7.7e-82 307.8 252 67.5
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.0e-81 307.4 251 66.9
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.2e-81 306.2 233 70.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 2.9e-81 305.8 256 65.6
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.8e-81 305.4 256 66.0
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.9e-80 303.1 238 70.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.7e-79 299.3 246 64.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.7e-79 299.3 250 64.8
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 4.7e-79 298.5 265 64.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.0e-79 297.7 233 67.8
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 8.0e-79 297.7 248 63.3
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 8.0e-79 297.7 241 67.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.4e-78 297.0 238 67.2
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.8e-78 296.6 239 67.8
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 5.2e-78 295.0 246 64.2
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.0e-77 293.1 218 69.3
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 4.4e-77 292.0 251 61.4
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 4.4e-77 292.0 324 54.3
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.7e-76 288.9 250 64.4
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 4.8e-76 288.5 254 63.0
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.4e-75 285.0 231 65.4
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.2e-74 283.9 244 63.5
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.6e-74 283.5 217 66.4
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.0e-74 283.1 247 61.1
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.0e-74 283.1 247 61.1
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.0e-74 283.1 247 61.1
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.0e-74 283.1 204 69.6
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 3.5e-74 282.3 244 63.1
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.0e-73 280.8 247 60.7
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.7e-73 280.0 244 61.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.7e-68 263.5 232 61.2
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 3.7e-68 262.3 315 49.8
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.0e-65 254.2 249 54.2
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 2.3e-65 253.1 255 54.1
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.9e-65 252.7 233 61.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.0e-62 244.2 214 62.1
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 4.0e-62 242.3 244 58.2
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-61 240.4 167 73.1
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 5.7e-61 238.4 150 76.0
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 7.5e-61 238.0 250 52.4
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-59 233.8 167 71.3
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 2.4e-59 233.0 249 54.2
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 7.0e-59 231.5 148 75.7
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 3.1e-54 216.1 136 76.5
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 6.8e-54 214.9 252 49.2
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.7e-50 203.0 245 48.6
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.3e-46 189.9 194 56.2
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.4e-45 185.7 268 43.7
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.9e-43 180.3 121 72.7
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 4.3e-40 169.1 117 74.4
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 9.5e-40 167.9 286 39.9
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 7.6e-37 158.3 130 68.5
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.0e-34 148.7 122 66.4
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.4e-30 136.7 267 37.5
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 8.9e-30 134.8 275 37.1
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.6e-26 124.0 100 68.0
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 6.2e-23 112.1 69 75.4
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 6.2e-23 112.1 95 58.9
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.1e-22 111.3 111 56.8
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 5.8e-21 105.5 73 71.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.3e-20 104.4 87 55.2
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 2.4e-19 100.1 73 67.1
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 4.3e-16 89.4 97 45.4
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 5.6e-16 89.0 108 38.0
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 6.2e-15 85.5 121 50.4
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.3e-12 77.8 78 52.6
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 6.4e-12 75.5 92 55.4
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 6.0e-10 68.9 153 32.7
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.3e-09 67.8 81 44.4
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.3e-09 67.8 134 40.3


User provided reference genes

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