Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 2.1e-310 1068.1 538 100.0
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 6.3e-238 827.4 541 78.6
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 2.3e-203 712.6 451 77.4
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 3.9e-203 711.8 451 77.4
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 2.9e-198 695.7 541 67.1
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 1.1e-176 624.0 496 63.3
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 1.4e-176 623.6 504 62.9
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 2.0e-175 619.8 409 73.6
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 2.9e-174 615.9 539 59.2
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.1e-173 614.0 539 59.2
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.4e-173 613.6 539 60.1
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 5.5e-173 611.7 477 64.8
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 9.3e-173 610.9 414 71.5
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 9.3e-173 610.9 479 64.5
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 1.6e-172 610.1 493 62.7
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 4.6e-172 608.6 476 63.4
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 1.8e-171 606.7 526 59.7
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 2.3e-171 606.3 488 62.9
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 3.9e-171 605.5 471 63.7
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.1e-170 604.0 538 59.9
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 1.1e-170 604.0 463 63.5
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 1.9e-170 603.2 485 61.9
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 5.7e-170 601.7 475 63.6
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 9.6e-170 600.9 489 62.2
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 1.6e-169 600.1 416 69.5
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 2.8e-169 599.4 481 62.0
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 3.7e-169 599.0 487 63.2
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 1.4e-168 597.0 482 62.4
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 1.4e-168 597.0 474 62.7
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 3.1e-168 595.9 490 60.6
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 3.1e-168 595.9 473 62.2
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 1.2e-164 583.9 487 61.4
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 1.5e-162 577.0 511 58.5
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 1.9e-162 576.6 493 59.0
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 5.7e-162 575.1 462 61.5
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 1.3e-161 573.9 494 58.3
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 1.6e-161 573.5 416 65.1
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 6.3e-161 571.6 489 58.3
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 1.5e-159 567.0 529 54.3
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 3.4e-159 565.8 502 58.2
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 3.8e-158 562.4 403 65.8
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 5.0e-158 562.0 467 59.3
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 8.5e-158 561.2 506 57.9
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 1.1e-157 560.8 474 59.5
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 2.5e-157 559.7 480 58.3
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 7.2e-157 558.1 520 54.8
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 1.2e-156 557.4 394 68.0
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 2.1e-156 556.6 421 63.2
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 7.9e-156 554.7 493 56.6
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 7.9e-156 554.7 414 63.0
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 1.0e-155 554.3 479 60.8
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 1.8e-155 553.5 521 54.1
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 3.9e-155 552.4 512 55.9
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 3.9e-155 552.4 414 62.6
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 1.5e-154 550.4 401 63.8
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 3.3e-154 549.3 422 63.5
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 3.3e-154 549.3 472 57.6
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 1.7e-153 547.0 411 63.0
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 2.2e-153 546.6 496 54.8
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 3.7e-153 545.8 480 59.0
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 3.7e-153 545.8 472 57.2
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 4.8e-153 545.4 402 65.2
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 8.2e-153 544.7 514 54.9
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 1.8e-152 543.5 475 57.9
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 1.8e-152 543.5 406 61.8
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 2.4e-152 543.1 473 57.3
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 5.3e-152 542.0 513 54.2
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 1.5e-151 540.4 480 58.3
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 2.0e-151 540.0 473 57.3
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 2.6e-151 539.7 477 56.0
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 1.3e-150 537.3 473 57.5
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 5.0e-150 535.4 448 58.5
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 1.1e-149 534.3 529 52.6
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 2.5e-149 533.1 494 55.3
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 4.2e-149 532.3 477 55.3
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 7.2e-149 531.6 416 61.8
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 6.7e-147 525.0 488 53.9
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 8.2e-145 518.1 426 61.3
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 5.9e-143 511.9 431 58.2
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 5.0e-142 508.8 525 52.2
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 2.7e-140 503.1 319 78.4
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 9.7e-138 494.6 494 51.8
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 1.1e-133 481.1 363 60.3
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.5e-125 453.4 296 74.7
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 2.1e-124 450.3 295 70.5
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 2.7e-124 449.9 291 71.8
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 2.7e-111 406.8 435 45.3
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 5.9e-111 405.6 383 50.9
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 5.0e-110 402.5 387 49.1
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 1.2e-108 397.9 295 66.8
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 2.0e-106 390.6 277 66.8
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 3.4e-106 389.8 251 74.5
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 4.9e-105 386.0 328 54.3
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.0e-94 351.7 262 70.2
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 4.3e-93 346.3 235 70.2
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 2.8e-92 343.6 230 68.3
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 1.5e-90 337.8 491 40.7
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 2.6e-90 337.0 229 69.9
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.2e-89 334.0 524 39.7
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 2.4e-88 330.5 364 45.9
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 1.3e-86 324.7 365 44.7
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.2e-84 318.2 247 68.4
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 2.8e-60 237.3 504 32.1
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 2.2e-57 227.6 276 43.8
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 2.2e-57 227.6 328 38.4
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 2.5e-53 214.2 165 61.2
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 2.4e-43 181.0 103 86.4
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 2.5e-40 171.0 283 33.2
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 3.6e-39 167.2 199 49.2
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 1.5e-37 161.8 336 31.0
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 1.7e-36 158.3 182 47.3
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 2.2e-36 157.9 199 43.7
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 1.1e-35 155.6 179 50.3
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 5.3e-35 153.3 410 30.0
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.0e-34 151.4 107 72.0
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 2.3e-30 137.9 234 37.2
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 7.4e-29 132.9 316 33.2
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.8e-28 131.0 91 72.5
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 7.0e-27 126.3 126 46.0
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.0e-22 112.5 62 80.6
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 7.7e-18 96.3 98 50.0
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 3.2e-16 90.9 66 69.7
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 5.9e-10 70.1 35 74.3
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.0e-06 57.4 38 63.2


User provided reference genes

Program Settings