Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 2070.4 1187 100.0
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1447.2 1203 75.8
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1427.5 1215 74.9
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 0.0e+00 1406.3 1224 74.3
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 0.0e+00 1320.4 1204 64.5
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 0.0e+00 1314.3 1203 71.2
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1291.9 1199 71.1
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1261.5 1162 69.9
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1238.0 1162 68.8
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 0.0e+00 1228.8 1200 69.1
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 0.0e+00 1169.5 1028 69.6
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 3.3e-255 885.9 1224 54.9
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 7.2e-242 841.6 1242 52.9
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 3.8e-235 819.3 1262 52.5
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.0e-231 807.0 1254 49.7
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.0e-223 780.4 1236 50.3
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 2.6e-223 780.0 1297 47.0
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 8.2e-222 775.0 1206 49.8
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.6e-220 770.0 1218 50.2
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 2.2e-219 766.9 1260 49.7
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 8.0e-217 758.4 1236 48.5
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 4.0e-216 756.1 1008 52.7
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.8e-214 749.2 1251 45.4
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.7e-212 743.4 1251 47.8
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.5e-210 736.9 919 51.4
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.2e-207 728.0 1238 47.9
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 4.8e-206 722.6 1234 46.4
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 4.4e-199 699.5 1206 44.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.7e-198 697.6 1251 46.0
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 3.7e-198 696.4 1250 47.5
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.9e-189 667.5 1258 47.0
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 2.7e-188 663.7 1218 46.2
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.1e-186 658.3 1248 47.6
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.3e-184 650.6 1245 47.6
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 3.1e-184 650.2 1075 42.0
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 4.0e-184 649.8 1256 45.1
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.2e-182 644.0 1248 47.0
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.4e-181 639.4 1248 46.9
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.2e-180 638.3 1249 46.0
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.7e-177 626.3 1248 45.9
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.8e-175 619.4 1243 45.5
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 2.9e-174 617.1 1246 41.8
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.6e-172 611.3 1254 45.7
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.9e-165 587.8 1221 42.6
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 7.1e-165 585.9 1302 42.1
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.4e-160 570.9 1225 42.4
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 4.6e-156 556.6 1210 41.7
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 7.3e-154 549.3 1312 36.1
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.1e-152 545.4 1232 38.3
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.6e-151 539.3 1240 37.3
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.4e-149 535.0 1074 45.3
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 9.3e-149 532.3 1188 41.8
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.8e-147 528.1 1216 41.0
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 1.9e-146 524.6 1228 40.1
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 4.3e-146 523.5 1287 38.0
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 5.6e-146 523.1 1307 36.9
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.6e-145 521.5 1124 44.0
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 6.2e-145 519.6 1279 37.1
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 8.1e-145 519.2 1243 38.5
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.3e-142 511.9 1225 39.4
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 3.3e-138 497.3 1221 39.9
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 3.7e-137 493.8 1224 40.0
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 3.4e-135 487.3 1235 41.4
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 3.8e-134 483.8 1279 33.6
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 2.7e-132 477.6 1254 35.6
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.7e-132 477.6 1077 37.9
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.0e-131 474.2 1258 36.9
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.9e-131 473.8 1029 41.6
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 3.1e-128 464.2 835 38.8
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.0e-128 462.6 810 39.5
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.2e-127 462.2 1270 39.7
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 4.5e-127 460.3 1279 37.8
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 5.9e-127 459.9 1269 38.6
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 4.2e-125 453.8 1270 39.3
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 2.0e-119 434.9 1256 37.3
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 5.0e-118 430.3 1094 42.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 9.4e-117 426.0 1348 34.9
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 8.8e-115 419.5 1271 36.3
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 2.0e-111 408.3 825 36.1
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 5.9e-111 406.8 1268 32.6
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.3e-110 405.6 1267 37.1
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.3e-110 405.6 1008 39.9
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.9e-110 404.4 1240 35.5
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.1e-106 392.5 1248 34.6
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.0e-106 391.7 1262 37.4
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 3.1e-104 384.4 1139 39.3
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.0e-103 381.7 715 36.8
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.5e-101 374.8 739 36.9
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.5e-98 365.5 813 35.3
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.5e-98 365.5 813 35.4
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 9.7e-98 362.8 1278 33.2
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 4.8e-97 360.5 1383 32.0
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 7.0e-96 356.7 1215 36.9
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 2.5e-93 348.2 1234 34.1
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.2e-93 346.7 812 33.6
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 3.6e-92 344.4 1071 31.5
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.3e-91 341.7 793 33.8
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 6.8e-91 340.1 1215 35.9
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.0e-90 338.6 781 34.7
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.0e-90 338.6 849 34.6
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 2.6e-90 338.2 1297 35.8
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 7.5e-90 336.7 1419 32.1
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.6e-87 328.9 816 32.4
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.7e-87 328.2 664 37.2
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 2.7e-87 328.2 690 36.7
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 2.9e-86 324.7 726 36.4
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 3.8e-86 324.3 1004 32.8
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 4.7e-84 317.4 1048 31.0
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 4.0e-83 314.3 1248 32.8
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.2e-82 312.8 1368 30.8
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.2e-81 308.5 1313 32.6
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.8e-81 308.1 1246 34.2
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.9e-81 307.4 822 33.0
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 3.2e-80 304.7 524 39.1
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 5.4e-80 303.9 600 37.7
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 7.0e-80 303.5 653 35.8
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.6e-79 302.4 1364 31.0
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.9e-78 298.1 1317 34.2
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.6e-77 293.9 595 35.6
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.1e-76 292.0 991 33.3
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 7.5e-74 283.5 1228 33.2
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.4e-72 279.3 1142 35.2
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 2.7e-71 275.0 820 31.2
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 7.8e-71 273.5 626 32.7
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 3.6e-68 264.6 1382 27.4
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 8.0e-68 263.5 1257 29.5
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.1e-67 261.5 1166 33.4
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.1e-67 261.5 1166 33.4
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 4.0e-67 261.2 827 30.6
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 5.2e-67 260.8 1089 34.6
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 5.2e-67 260.8 1241 30.1
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.9e-65 255.0 762 29.3
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 7.3e-61 240.4 1373 28.8
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.9e-58 229.9 502 35.5
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.7e-57 229.2 1166 31.6
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 3.3e-53 214.9 652 32.8
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 5.6e-53 214.2 609 30.9
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 3.1e-51 208.4 683 30.0
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.0e-51 208.0 493 33.7
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.0e-46 193.4 636 31.4
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 1.6e-44 186.0 600 29.0
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 2.6e-42 178.7 944 34.3
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 9.9e-42 176.8 1105 30.0
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.7e-39 168.7 638 30.3
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 3.9e-38 164.9 653 28.3
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 6.6e-38 164.1 646 29.3
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 1.5e-37 162.9 590 29.2
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.9e-33 148.7 599 29.0
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 3.8e-33 148.3 1322 24.1
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 3.7e-28 131.7 537 28.5
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 2.1e-23 115.9 1089 27.5
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.9e-21 109.4 942 27.6
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 4.8e-20 104.8 331 28.4
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.1e-19 103.6 637 26.1
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.8e-19 102.8 422 26.5
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.5e-17 94.4 530 30.4
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.9e-16 92.8 143 53.8
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.1e-13 83.6 220 38.6
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.5e-13 83.2 1093 23.0
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 3.4e-10 72.0 642 26.6
Thecc.03G197000 Theobroma cacao HOM05D000896 ORTHO05D000594 2.9e-09 68.9 41 73.2
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.9e-09 68.9 340 32.4
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 3.6e-07 62.0 164 35.4
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 3.6e-07 62.0 164 35.4
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 7.9e-07 60.8 104 44.2


User provided reference genes

Program Settings