Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.0e-112 410.2 234 100.0
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.8e-96 356.3 253 83.4
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.0e-95 352.8 234 86.8
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 7.1e-93 344.4 234 84.6
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 4.6e-84 315.1 234 81.2
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 6.0e-84 314.7 239 79.9
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.5e-82 310.1 182 92.3
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.3e-82 308.5 234 79.1
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.3e-81 307.0 237 75.1
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.6e-81 306.6 239 77.0
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.6e-81 306.6 237 78.1
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 5.3e-80 301.6 238 77.3
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 9.0e-80 300.8 235 76.6
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 5.8e-79 298.1 234 76.5
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 4.9e-78 295.0 234 76.1
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.1e-77 293.9 234 71.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 2.4e-77 292.7 235 74.5
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 2.4e-77 292.7 235 74.5
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 4.2e-77 292.0 237 70.5
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 9.3e-77 290.8 234 71.4
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 9.3e-77 290.8 235 74.5
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.6e-76 290.0 241 73.4
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.0e-75 287.3 235 75.3
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 3.0e-75 285.8 235 74.0
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 5.1e-75 285.0 238 69.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.1e-74 283.9 236 74.2
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.9e-74 283.1 232 73.3
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.6e-73 278.9 168 92.9
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 8.1e-73 277.7 235 74.0
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.1e-72 277.3 240 69.6
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.1e-72 277.3 240 69.6
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.1e-72 277.3 237 70.9
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.1e-72 277.3 236 72.5
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.8e-72 276.6 237 71.3
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 4.0e-72 275.4 240 69.6
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 9.0e-72 274.2 237 70.9
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 9.0e-72 274.2 236 70.8
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.2e-71 273.9 237 70.9
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.6e-71 272.7 239 69.0
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 3.4e-71 272.3 240 70.0
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 3.4e-71 272.3 236 65.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.4e-71 272.3 235 67.2
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 5.8e-71 271.6 235 71.9
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 7.6e-71 271.2 233 73.0
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 7.6e-71 271.2 235 71.5
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 9.9e-71 270.8 244 69.3
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 9.9e-71 270.8 233 73.0
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 9.9e-71 270.8 235 71.9
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.7e-70 270.0 241 68.9
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.2e-70 269.6 237 67.1
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.2e-70 269.6 236 69.1
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 3.8e-70 268.9 185 83.8
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 3.8e-70 268.9 228 72.4
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 4.9e-70 268.5 228 67.5
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 6.4e-70 268.1 238 68.9
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.1e-69 267.3 237 66.7
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.1e-69 267.3 180 85.0
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.1e-69 267.3 235 70.2
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.4e-69 266.9 233 72.1
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 2.4e-69 266.2 264 64.8
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 4.2e-69 265.4 198 78.8
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.5e-69 265.0 234 71.4
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 2.1e-68 263.1 180 82.8
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 3.5e-68 262.3 242 67.4
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 4.6e-68 261.9 236 63.1
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 1.3e-67 260.4 225 70.2
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.8e-67 260.0 245 63.3
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 3.0e-67 259.2 187 78.1
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.0e-67 259.2 237 64.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 3.9e-67 258.8 234 67.5
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.1e-66 257.3 240 60.8
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.5e-66 256.1 244 60.2
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.5e-66 256.1 179 83.2
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 9.6e-66 254.2 239 62.8
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.3e-65 253.8 189 77.8
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 6.2e-65 251.5 237 67.1
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 8.1e-65 251.1 181 80.7
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 8.1e-65 251.1 240 60.0
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 8.1e-65 251.1 185 77.3
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.1e-64 250.8 240 59.6
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.2e-63 247.3 237 62.0
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.2e-63 247.3 237 62.4
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.5e-63 246.9 199 68.3
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 4.5e-63 245.4 239 59.0
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.0e-62 244.2 187 71.7
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.0e-62 244.2 186 71.0
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 2.9e-62 242.7 182 78.6
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 3.8e-62 242.3 198 70.2
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 4.9e-62 241.9 248 59.3
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 7.1e-61 238.0 251 64.1
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 7.1e-61 238.0 191 68.1
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 7.1e-61 238.0 271 53.1
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 6.0e-60 235.0 196 66.8
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.0e-59 234.2 236 65.3
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.0e-59 234.2 236 65.3
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 3.3e-58 229.2 256 56.2
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 7.4e-58 228.0 198 63.6
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 6.3e-57 224.9 187 70.1
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 8.5e-54 214.5 202 64.9
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 9.3e-53 211.1 308 48.1
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.6e-52 210.3 183 67.2
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.0e-51 207.6 218 56.4
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 1.3e-51 207.2 197 68.0
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.7e-51 204.5 168 66.7
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 3.3e-50 202.6 206 58.3
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 2.2e-46 189.9 192 55.7
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 6.5e-46 188.3 182 59.9
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 9.4e-45 184.5 237 48.9
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.0e-43 179.5 129 76.7
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.0e-43 179.5 107 86.0
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 9.7e-42 174.5 125 80.8
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.3e-41 174.1 104 85.6
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 5.3e-40 168.7 322 45.3
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 2.9e-38 162.9 144 58.3
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 3.8e-38 162.5 145 62.1
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.2e-37 159.1 93 87.1
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 9.4e-37 157.9 173 54.3
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.7e-28 129.8 73 89.0
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 6.1e-28 128.6 218 44.0
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 8.8e-27 124.8 97 79.4
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.5e-26 124.0 99 64.6
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 2.8e-25 119.8 160 45.6
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.8e-24 117.1 153 44.4
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 2.4e-24 116.7 100 58.0
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.2e-23 114.4 216 38.0
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.3e-22 110.9 234 35.9
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 2.2e-22 110.2 79 65.8
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 2.9e-22 109.8 153 45.8
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.6e-20 104.0 261 33.0
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.6e-20 104.0 258 32.6
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 2.1e-20 103.6 258 32.2
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.5e-18 97.4 82 65.9
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.4e-18 96.3 209 35.9
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 5.5e-13 79.0 174 32.8
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 9.8e-10 68.2 184 32.6
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.3e-09 67.8 115 38.3
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 3.7e-09 66.2 51 64.7
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 1.4e-08 64.3 53 84.9
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 2.7e-07 60.1 194 28.9
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.3e-06 57.0 94 48.9
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 8.6e-06 55.1 238 28.6


User provided reference genes

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