Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 4.0e-114 415.2 288 100.0
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 2.6e-81 306.2 288 81.2
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 7.6e-81 304.7 202 77.7
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 5.9e-73 278.5 204 71.6
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.4e-65 252.7 202 65.3
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.9e-64 249.6 202 64.4
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.8e-64 249.2 202 64.9
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 4.7e-62 242.3 204 66.2
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 7.9e-62 241.5 204 66.7
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.4e-58 230.7 204 64.2
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.8e-37 160.6 205 50.2
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 2.0e-36 157.1 206 50.0
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 9.8e-36 154.8 221 48.0
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 1.2e-33 147.9 208 48.6
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.6e-33 147.5 218 45.9
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 5.0e-32 142.5 211 44.5
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.1e-31 141.4 212 47.2
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 7.3e-31 138.7 206 45.6
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 5.2e-29 132.5 203 42.4
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 1.5e-28 131.0 209 42.6
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 2.6e-28 130.2 212 43.4
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 5.7e-28 129.0 208 44.2
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.3e-27 127.9 213 41.8
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.3e-27 127.9 208 42.8
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 1.1e-26 124.8 217 41.5
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 1.2e-25 121.3 211 41.2
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 2.0e-25 120.6 223 39.0
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 5.9e-25 119.0 227 41.0
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 3.9e-24 116.3 209 40.7
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 4.3e-23 112.8 223 40.4
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 5.6e-23 112.5 207 38.6
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 5.6e-23 112.5 202 38.6
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 9.5e-23 111.7 208 40.4
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.6e-22 110.9 222 39.2
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 2.8e-22 110.2 198 38.9
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 6.2e-22 109.0 208 39.4
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 6.2e-22 109.0 222 37.4
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 6.2e-22 109.0 215 39.5
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 6.2e-22 109.0 210 42.4
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 8.0e-22 108.6 219 37.9
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.8e-21 107.5 220 38.2
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.3e-21 107.1 226 37.6
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.2e-20 104.8 226 37.2
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.4e-20 103.2 212 39.6
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 4.4e-20 102.8 207 41.1
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 7.5e-20 102.1 207 39.6
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.3e-19 101.3 200 38.0
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 1.7e-19 100.9 211 39.8
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 2.2e-19 100.5 212 39.2
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 2.9e-19 100.1 214 38.8
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 2.9e-19 100.1 200 37.5
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 2.9e-19 100.1 226 36.7
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 3.7e-19 99.8 215 38.6
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 4.9e-19 99.4 209 39.7
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 4.9e-19 99.4 208 37.5
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 8.3e-19 98.6 215 37.7
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 8.3e-19 98.6 225 37.8
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 8.3e-19 98.6 226 36.7
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.4e-18 97.8 209 38.3
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.4e-18 97.1 200 36.5
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 7.0e-18 95.5 200 36.5
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 7.0e-18 95.5 206 36.9
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 1.2e-17 94.7 208 37.5
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 1.2e-17 94.7 209 39.2
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.5e-17 93.2 200 37.0
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 7.8e-17 92.0 215 34.0
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.3e-16 91.3 217 36.4
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 2.3e-16 90.5 206 34.5
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 3.0e-16 90.1 209 34.9
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 3.0e-16 90.1 209 34.9
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 5.0e-16 89.4 213 37.6
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 8.6e-16 88.6 216 36.6
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 8.6e-16 88.6 215 37.2
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 8.6e-16 88.6 226 34.5
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.1e-15 88.2 216 37.0
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.5e-15 87.8 201 35.8
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.9e-15 87.4 206 37.4
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 4.3e-15 86.3 215 36.3
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.3e-15 86.3 219 36.5
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 5.6e-15 85.9 219 35.2
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 7.3e-15 85.5 212 34.9
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 9.5e-15 85.1 219 35.6
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 1.2e-14 84.7 204 36.8
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 1.2e-14 84.7 221 35.7
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 2.8e-14 83.6 210 37.1
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 4.7e-14 82.8 208 35.1
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 4.7e-14 82.8 216 35.2
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.4e-13 81.3 228 33.8
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 1.4e-13 81.3 206 35.9
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 1.8e-13 80.9 207 35.7
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 3.1e-13 80.1 208 34.6
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 4.0e-13 79.7 207 35.3
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 4.0e-13 79.7 214 34.6
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 5.2e-13 79.3 209 32.5
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 1.2e-12 78.2 208 33.2
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 1.2e-12 78.2 77 55.8
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.5e-12 77.8 206 34.5
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 2.0e-12 77.4 205 35.6
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 2.6e-12 77.0 204 36.3
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 5.8e-12 75.9 208 35.1
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 2.2e-11 73.9 164 36.0
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 8.3e-11 72.0 206 33.0
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 1.9e-10 70.9 149 34.9
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 1.9e-10 70.9 144 35.4
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 4.1e-10 69.7 208 32.7
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 5.4e-10 69.3 208 32.2
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 7.1e-10 68.9 205 31.7
BcaB08g36543 Brassica carinata HOM05D001903 ORTHO05D001847 9.2e-10 68.6 202 33.2
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 1.2e-09 68.2 43 72.1
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 1.6e-09 67.8 204 33.3
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 2.7e-09 67.0 51 62.7
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 3.9e-08 63.2 221 31.2
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 6.6e-08 62.4 207 33.3
BraA02t05560Z Brassica rapa HOM05D001903 ORTHO05D001847 8.6e-08 62.0 200 29.5
Thhalv10014275m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 8.6e-08 62.0 214 30.4
Lsat_1_v5_gn_7_107661 Lactuca sativa HOM05D001903 ORTHO05D001847 1.1e-07 61.6 206 31.1
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.5e-07 61.2 54 57.4
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 3.3e-07 60.1 225 30.7
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 4.3e-07 59.7 55 54.5
Sp6g24210 Schrenkiella parvula HOM05D001903 ORTHO05D001847 4.3e-07 59.7 201 30.3
Aa31LG1G14000 Aethionema arabicum HOM05D001903 ORTHO05D001847 5.6e-07 59.3 207 29.0
ATR1120G200 Amborella trichopoda HOM05D001903 ORTHO05D001847 7.3e-07 58.9 180 31.7
A10p19730 Brassica napus HOM05D001903 ORTHO05D001847 9.5e-07 58.5 204 32.4
CARHR192630 Cardamine hirsuta HOM05D001903 ORTHO05D001847 9.5e-07 58.5 204 29.4
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 2.1e-06 57.4 83 45.8
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 2.1e-06 57.4 66 50.0
BcaC03g13742 Brassica carinata HOM05D001903 ORTHO05D001847 2.8e-06 57.0 200 28.5
BolC2t07026H Brassica oleracea HOM05D001903 ORTHO05D001847 2.8e-06 57.0 200 28.5
THA.LOC104811030 Tarenaya hassleriana HOM05D001903 ORTHO05D001847 8.1e-06 55.5 213 29.1


User provided reference genes

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