Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 4.4e-172 607.8 302 100.0
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 7.9e-137 490.7 284 85.6
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 5.3e-133 478.0 284 83.1
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.7e-129 465.7 262 87.0
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 6.7e-128 461.1 284 79.6
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.3e-126 456.8 262 85.1
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.3e-126 456.8 291 78.4
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.3e-126 456.8 262 85.1
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.6e-124 449.1 285 78.2
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 7.7e-124 447.6 285 77.9
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 2.0e-103 379.8 286 64.3
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 3.7e-102 375.6 305 60.7
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 5.5e-98 361.7 292 62.3
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 5.5e-98 361.7 286 64.0
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.2e-97 360.5 284 62.0
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.6e-97 359.0 287 63.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 4.7e-97 358.6 287 62.4
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 4.7e-97 358.6 284 62.3
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 6.1e-97 358.2 287 63.1
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 8.0e-97 357.8 285 60.7
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.8e-96 356.7 290 60.3
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 3.0e-96 355.9 343 55.4
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-95 354.0 283 62.2
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-95 354.0 283 62.2
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.4e-95 352.4 284 60.6
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 5.7e-95 351.7 289 61.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 5.7e-95 351.7 290 61.4
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.8e-94 349.4 306 59.5
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.7e-94 349.0 276 60.5
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 6.3e-94 348.2 287 60.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 6.3e-94 348.2 288 60.4
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.1e-93 347.4 266 60.5
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.1e-93 347.4 287 60.3
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.8e-93 346.7 242 68.2
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 3.1e-93 345.9 286 59.1
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 3.1e-93 345.9 298 60.1
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 4.1e-93 345.5 293 59.7
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 5.4e-93 345.1 289 59.9
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.2e-92 344.0 287 59.9
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.7e-92 342.8 285 57.9
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.5e-92 342.0 285 58.9
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 5.9e-92 341.7 319 56.1
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.9e-91 339.3 286 59.1
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.8e-91 339.0 285 61.8
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.0e-91 338.6 302 57.6
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.0e-91 338.6 302 57.6
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 5.0e-91 338.6 246 63.8
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.9e-90 336.7 220 70.5
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.9e-90 336.7 289 62.3
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.9e-90 336.7 258 64.0
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.9e-90 336.7 281 59.8
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 5.5e-90 335.1 284 60.6
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 5.5e-90 335.1 284 60.6
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 7.2e-90 334.7 273 59.7
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.2e-89 334.0 292 57.9
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 2.7e-89 332.8 248 64.1
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 3.6e-89 332.4 239 64.4
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 3.6e-89 332.4 275 60.0
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.4e-88 330.5 289 58.1
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.0e-88 329.3 250 62.4
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 6.8e-88 328.2 236 64.8
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.5e-87 327.0 289 57.4
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.0e-87 326.6 252 63.1
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.6e-87 326.2 256 62.1
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 5.7e-87 325.1 285 59.3
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 5.7e-87 325.1 213 69.5
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 7.5e-87 324.7 276 57.6
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.3e-86 323.9 281 58.0
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 2.2e-86 323.2 249 60.2
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.8e-86 322.8 217 65.4
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.1e-85 320.9 249 61.8
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 1.4e-85 320.5 283 54.1
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.8e-85 320.1 212 67.9
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.8e-85 320.1 258 60.5
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.8e-85 320.1 293 53.6
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 4.1e-85 318.9 284 57.4
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 9.1e-85 317.8 284 57.0
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 9.1e-85 317.8 290 57.2
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 9.1e-85 317.8 291 57.0
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.6e-84 317.0 292 56.2
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.0e-84 316.6 322 54.7
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 2.0e-84 316.6 284 57.7
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 3.5e-84 315.8 285 56.5
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 3.5e-84 315.8 285 56.5
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 3.5e-84 315.8 198 72.2
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 3.5e-84 315.8 349 48.7
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.5e-84 315.5 256 59.4
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 1.3e-83 313.9 287 56.8
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.9e-83 312.8 256 58.6
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.9e-83 312.8 284 56.7
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 5.0e-83 312.0 284 56.3
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.5e-82 310.5 244 62.7
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.5e-82 310.5 270 56.7
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.5e-82 309.7 249 60.2
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 3.3e-82 309.3 248 61.7
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.8e-81 306.2 292 54.8
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 4.7e-81 305.4 223 63.2
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 2.3e-80 303.1 289 59.2
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.0e-79 300.1 219 60.7
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 2.6e-79 299.7 271 57.2
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 2.2e-78 296.6 313 49.8
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.7e-78 295.8 268 55.6
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.8e-77 293.5 248 57.3
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.8e-77 293.5 329 48.9
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.2e-77 292.7 285 55.4
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 4.1e-77 292.4 290 53.4
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 9.2e-77 291.2 289 50.2
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 7.8e-76 288.1 229 60.7
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.8e-76 288.1 285 54.4
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.3e-75 287.3 311 51.4
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.9e-75 286.2 307 51.1
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 4.3e-74 282.3 196 64.3
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 2.1e-73 280.0 294 52.4
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 2.1e-73 280.0 227 59.9
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.0e-71 273.5 194 65.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.1e-69 267.7 250 53.2
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.2e-68 264.2 323 45.2
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.5e-68 262.7 222 55.0
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 8.1e-65 251.5 252 48.4
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.8e-64 250.4 286 50.0
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 6.4e-62 241.9 212 56.1
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 3.2e-61 239.6 213 56.8
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 5.4e-61 238.8 204 56.9
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 3.6e-57 226.1 216 51.9
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.0e-55 220.3 216 49.1
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.0e-55 220.3 216 49.1
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.6e-55 219.9 165 63.0
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.7e-54 217.2 179 58.7
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.9e-53 213.8 179 58.1
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 2.1e-52 210.3 225 44.9
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.3e-51 207.6 193 53.4
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.1e-51 205.7 178 56.7
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.8e-48 197.2 124 69.4
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.7e-43 180.6 117 68.4
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 4.8e-41 172.6 223 40.8
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.0e-40 169.5 107 71.0
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 4.4e-39 166.0 129 60.5
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 5.4e-37 159.1 165 55.8
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 7.1e-37 158.7 275 36.4
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.6e-36 157.5 180 47.8
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 7.9e-36 155.2 192 45.3
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 9.6e-34 148.3 108 57.4
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 3.5e-28 129.8 281 33.5
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 2.3e-27 127.1 143 48.3
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.0e-22 111.7 156 42.3
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 2.2e-22 110.5 145 47.6
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 4.2e-21 106.3 106 43.4
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 3.0e-19 100.1 168 36.9
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.9e-19 99.8 76 53.9
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.8e-16 90.9 119 47.1
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 1.2e-15 88.2 79 55.7
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 6.7e-11 72.4 40 80.0
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 8.7e-11 72.0 58 53.4
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 5.7e-10 69.3 36 77.8
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 2.4e-08 63.9 48 58.3
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 3.1e-08 63.5 40 67.5
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.3e-06 58.2 38 65.8


User provided reference genes

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