Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 1.1e-130 469.9 232 100.0
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 1.2e-113 413.3 232 87.9
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 3.3e-111 405.2 234 87.2
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 8.3e-102 374.0 232 80.2
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 2.8e-89 332.4 235 69.4
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 2.8e-89 332.4 232 73.7
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.4e-88 330.1 232 73.3
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 4.0e-88 328.6 236 69.5
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 7.8e-84 314.3 241 66.0
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 2.3e-83 312.8 241 66.0
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 3.3e-82 308.9 245 66.5
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 9.5e-82 307.4 227 69.2
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 1.2e-81 307.0 245 66.5
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.2e-81 307.0 249 65.9
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 8.0e-81 304.3 236 65.7
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 8.0e-81 304.3 236 65.7
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.3e-80 302.8 247 62.8
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 2.3e-80 302.8 235 67.2
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 4.0e-80 302.0 234 66.7
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 1.5e-79 300.1 238 67.6
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 2.0e-79 299.7 247 62.3
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.0e-79 299.7 247 62.3
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 5.8e-79 298.1 236 65.7
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 7.5e-79 297.7 233 65.2
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 6.4e-78 294.7 242 65.3
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 6.4e-78 294.7 235 65.5
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 7.0e-77 291.2 227 66.5
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.2e-76 290.4 247 61.9
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 2.0e-76 289.7 239 64.4
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.5e-76 288.9 244 62.7
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 1.0e-75 287.3 241 63.9
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.3e-75 286.2 247 61.5
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 1.1e-74 283.9 242 60.3
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 9.5e-74 280.8 241 60.6
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 1.2e-73 280.4 238 61.3
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.8e-73 279.3 234 63.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 4.7e-73 278.5 239 62.8
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 8.1e-73 277.7 232 63.8
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 1.1e-72 277.3 235 58.7
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 2.3e-72 276.2 241 60.2
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 3.1e-72 275.8 242 59.9
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 5.2e-72 275.0 237 58.6
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 5.2e-72 275.0 182 74.2
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 6.8e-72 274.6 242 59.9
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 8.9e-72 274.2 240 61.7
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 1.2e-71 273.9 237 59.1
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 1.2e-71 273.9 245 60.4
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 2.6e-71 272.7 240 60.0
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 3.4e-71 272.3 240 61.2
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 7.5e-71 271.2 241 61.0
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 9.9e-71 270.8 240 58.3
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 1.7e-70 270.0 239 59.8
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 2.9e-70 269.2 238 59.2
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 2.9e-70 269.2 239 58.2
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 2.9e-70 269.2 182 72.0
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 4.9e-70 268.5 242 57.4
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 8.3e-70 267.7 232 61.2
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 1.4e-69 266.9 242 57.9
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 2.4e-69 266.2 239 57.7
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 2.4e-69 266.2 240 56.2
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 1.2e-68 263.8 239 56.9
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 3.5e-68 262.3 236 60.2
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 1.1e-66 257.3 244 59.4
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 5.6e-66 255.0 245 56.3
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.6e-65 253.4 238 56.7
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 3.6e-65 252.3 244 55.7
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 4.7e-65 251.9 236 58.9
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 8.1e-65 251.1 237 57.0
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 8.1e-65 251.1 241 57.3
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 1.4e-64 250.4 191 64.9
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 6.8e-64 248.1 180 68.9
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 2.0e-63 246.5 171 68.4
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 4.4e-63 245.4 247 53.8
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 9.9e-63 244.2 227 58.1
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 2.9e-62 242.7 234 55.1
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 2.9e-62 242.7 223 57.8
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.1e-61 240.7 230 57.8
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 7.1e-61 238.0 240 53.8
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.2e-60 237.3 236 55.5
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.3e-59 233.8 240 53.3
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 1.3e-59 233.8 261 50.2
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 3.9e-59 232.3 207 59.4
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 2.5e-58 229.6 233 54.1
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 1.6e-57 226.9 234 54.7
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 3.6e-57 225.7 226 55.3
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 5.2e-56 221.9 136 78.7
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 6.9e-56 221.5 240 52.9
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 3.4e-55 219.2 263 48.7
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 3.4e-55 219.2 208 56.2
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 9.9e-55 217.6 240 51.7
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.2e-54 216.5 191 57.6
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.2e-54 216.5 191 57.6
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 3.9e-51 205.7 215 51.2
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 2.1e-49 199.9 234 49.6
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 6.7e-43 178.3 189 49.7
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 2.5e-42 176.4 189 48.1
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 9.0e-40 167.9 187 47.1
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 3.4e-39 166.0 189 50.8
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 7.9e-36 154.8 204 45.1
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 6.9e-32 141.7 145 54.5
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.9e-29 133.7 166 47.0
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.9e-29 133.7 166 47.0
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 3.2e-29 132.9 160 51.9
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 4.2e-29 132.5 166 46.4
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 1.8e-27 127.1 140 54.3
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 1.6e-25 120.6 129 52.7
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 2.8e-25 119.8 126 50.0
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 8.2e-25 118.2 144 46.5
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 1.4e-24 117.5 209 35.4
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 1.4e-24 117.5 209 35.4
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 1.4e-24 117.5 134 48.5
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 2.4e-24 116.7 141 50.4
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 4.1e-24 115.9 138 49.3
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 5.3e-24 115.5 142 48.6
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 2.0e-23 113.6 163 44.8
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 5.0e-22 109.0 156 44.9
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 1.4e-21 107.5 151 44.4
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 1.4e-21 107.5 137 45.3
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 4.2e-21 105.9 148 45.9
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 6.1e-20 102.1 126 48.4
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 9.7e-18 94.7 120 49.2
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.8e-16 90.5 115 45.2
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 3.4e-15 86.3 116 45.7
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 5.1e-11 72.4 65 53.8
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 3.7e-09 66.2 53 62.3


User provided reference genes

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